Daktulosphaira vitifoliae (grape phylloxera): 126909306
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Entry
126909306 CDS
T09738
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126909306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvt03021
]
126909306
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126909306
Transcription machinery [BR:
dvt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126909306
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126909306
U7-dependent histone pre-mRNA processing factors
126909306
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
RXLR
Motif
Other DBs
NCBI-GeneID:
126909306
NCBI-ProteinID:
XP_050547676
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MMHPNKSQNTSEQVTSVLNEAVVVIDENKKLELLNKAKEIIVYQEPKLLPQFIDDVIAFQ
NDHSSLVRKFVVGFIEECCKKEKSNVCVTLPNLLILLEDRSHIVQKRVIQAASVVYRAGL
QWISLTDLPSSDLSNVWQDLSNLKSHSINMVDNDNEGIRTQVIKFMETVILVQTYKGEGG
VDCEDDMSLEDIPLTLKITRRRRLEDEAKVVFDLLSRFVHSGNVGCANLITCMRSLILIA
KFRVSFIEKVLVALENLTKNMPSSLTTSQINCVNKNLKLQLLSFLRLPASTDHHQTIGKI
LLDIGSTNQEILKAFQVVSKNDDSKRLLRSLKRKNDEKDSYNFDKDDIPEKKRCIESIAF
DPELVKMWLLERFSVDTVSKLVMNFMPKLPSKMPLYFQSNYTPITAAGTDSQIKNLADLL
SNQICTSNLSLPELNECKSEKIETIEMIKEELLKKNDDEENLFLSMPAELNVKCCRIDPS
EAEELSHDALLRILDTGKLIMSKPFKDIHNKVITRMAVMCNDKFLNTILDYIELNMTYNL
DLCLSWLYEEYSMNQGFTKLPTAFRNSLSSEQNYNTILCSLIRAALNIDDLKDKEFVMTA
LYLESPFITDDAVDILKDICCKHTFGLYILNELVTKRPPRQLVYLNALLFYTSHNETELR
EMALNYTSKLYTNNELKNIIEEYATFYLGFLRLPLPPDVLFGQESGRLIKSEVWDDDSTT
ACLYLYFMLMANNYELIHELASVFVHAKSEVKRVIIKLLPQPIQKMPMNSPEMLRLLEDI
PKGAETMVTRVLHIVTEKEIPSIELVSMVKKLFDNQLVEVRFLVPVMSGLDKKYILNVLP
QLVKLNPNVVKEVFNRILGINSTIANANPSLSPAELLIALHTMETDPNDLKFIIKATSLC
FAEKSVFTQ
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatccaaataaaagtcaaaatacatctgagcaggtgactagtgttttaaatgaa
gcggttgtggttattgatgaaaataaaaaacttgaacttttaaacaaagcaaaagaaata
atagtttaccaagaaccaaaattattaccacaatttattgatgatgtcattgcatttcaa
aatgatcatagttcattagtccgaaaatttgttgtgggattcattgaagagtgctgtaaa
aaagaaaaatctaatgtatgtgttacattaccaaacttacttatacttctggaggatcgc
tctcatattgtccaaaaaagagtaattcaagcagctagtgttgtgtatagagctggctta
caatggatatctctaactgatttaccaagttctgatttgtctaatgtttggcaagatctc
tctaatttaaagtctcattctattaatatggtcgataatgataatgaaggtattcgtact
caagtaatcaaatttatggaaacagtaatactagttcaaacatataaaggtgaaggtggt
gttgactgtgaagacgacatgtcgttagaagacatacctttaactttaaaaattacaagg
cgacgaagacttgaagatgaagcaaaggtagtatttgatttattgtctcgatttgtccat
tctggtaatgttggttgcgctaatttaattacttgtatgagatcactgatactgatagct
aaattccgtgtttcatttattgaaaaagttttagttgcactagagaatttaaccaaaaac
atgcctagctcattgacaaccagtcaaataaattgtgtgaataagaatcttaaactccaa
cttttgagttttcttcgtctgccagcttcaactgatcatcaccaaacaattggaaaaatt
ttactggatataggctcgactaatcaagaaatattaaaggcttttcaagtagtatcaaag
aatgatgacagtaaacgtttacttcgttcactaaaaagaaaaaatgatgaaaaggatagc
tataattttgataaggatgatattccagaaaaaaaaagatgcattgagagtatagcattt
gatccagaattagttaaaatgtggcttcttgaaaggttttcagttgacaccgtttcaaaa
ctagtaatgaatttcatgccaaaattaccatcaaaaatgcctttatatttccaatcaaat
tatacaccaataacggctgctggtacagatagtcaaattaaaaatttagcagacctttta
tctaatcagatttgtacttcaaatctttctttgcccgaattaaatgaatgcaaatctgaa
aaaattgaaacaatagaaatgattaaagaggaacttttaaagaaaaatgatgatgaagaa
aatttgtttttatcaatgcctgctgaattaaatgtaaaatgctgtcgaattgacccatct
gaagcagaagaattatcacatgacgcattattaagaatattggatactggcaaacttatt
atgtcaaaaccatttaaagatatacataataaagttattactcgtatggctgtcatgtgt
aatgataaatttctaaatactatactagattacatagaattaaatatgacatataattta
gatttatgtttgtcttggttatatgaggaatatagtatgaatcaaggatttactaagctg
ccgacagctttcagaaattccctctcatcagaacaaaactataatacaattttatgttca
ttaataagagcagccttgaatattgatgacctcaaagataaagaatttgtcatgaccgct
ctctacttagaaagcccatttataactgatgatgctgttgatattttaaaggatatttgc
tgtaaacatacttttggcctttacatacttaatgaacttgttactaaaagaccacctaga
caattagtttacttaaatgctcttctcttttacacatctcataatgaaactgaattacgt
gagatggcattaaattatacaagtaaactgtatacgaacaatgaattaaaaaatatcatt
gaagaatatgctaccttttatttgggttttttgagattaccacttccaccagatgtactc
tttggccaagaaagtggacggctaattaaatcagaagtttgggatgatgattcaacaact
gcttgcttatatttatatttcatgctaatggctaataattatgagttgattcatgagtta
gcatcagtatttgttcacgcaaaaagtgaagtgaaacgtgttattatcaaactgttacct
caacctattcaaaaaatgccaatgaattcaccggaaatgttaagattgcttgaagatatt
ccaaaaggagctgaaactatggtaacccgagtattacatattgttacagaaaaagaaatt
ccatcgattgaattagtttcaatggtgaaaaagttatttgataatcagttagtggaagtg
agatttttagttcctgttatgtctggcttggataaaaaatatattttaaatgttttacca
caattagtgaagcttaatcctaatgtagtaaaagaggtatttaatagaatattaggaata
aactctacaatagctaatgctaatccttcactaagtcctgcagaattattaattgcttta
cacactatggaaacagatcctaatgatcttaaattcattattaaagcaacatctctgtgt
tttgctgaaaaatcagtatttactcaa
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