Daktulosphaira vitifoliae (grape phylloxera): 126909519
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Entry
126909519 CDS
T09738
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dvt
Daktulosphaira vitifoliae (grape phylloxera)
Pathway
dvt03008
Ribosome biogenesis in eukaryotes
dvt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126909519
09123 Folding, sorting and degradation
03018 RNA degradation
126909519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvt03019
]
126909519
03009 Ribosome biogenesis [BR:
dvt03009
]
126909519
03016 Transfer RNA biogenesis [BR:
dvt03016
]
126909519
03036 Chromosome and associated proteins [BR:
dvt03036
]
126909519
Messenger RNA biogenesis [BR:
dvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126909519
mRNA degradation factors
5'-3' decay
5' exonucleases
126909519
Ribosome biogenesis [BR:
dvt03009
]
Eukaryotic type
Pre-60S particles
RNases
126909519
Transfer RNA biogenesis [BR:
dvt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126909519
Chromosome and associated proteins [BR:
dvt03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126909519
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DUF8078
Motif
Other DBs
NCBI-GeneID:
126909519
NCBI-ProteinID:
XP_050547911
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MAEFTLHKENYYRNKLEYNVITEDVMRSQAEGYIRAIQWNLNYYYNGCCSWSWYYPHHYA
PYISDIKDFENIQLEFDLGQPFLPFQQLLAVLPSLSKELLPKPFQDLMIEEASPIRMYYP
EQFETDLNGKQHEWEAVVLVPFIDEETLLKSMKMVEHKLSDDEKKRNSHGPMYLFKYTKE
NMGIVSNSKYFPPIQESHAHRILINREDIAVDPNDLVKGLCPNVNLDVYHVGFPTLHLIP
ITAELLKKGVKVFQSSSLGENMIIKIINQDENIEGNIQSIAKELLGKTVYANWPHLEEIK
VTAISSKSLLLSLDDNEHVIVRDMDDSAVQEFKLLSQGFAKTYMSTRGIDIGKTSILLRG
QKLKGTKYIPRQDGSGVDLVKAWCEIPSTVAFQTAVLDLEVNDPHIKQSYFALEEYFPVG
GNVFVLDAPFYGCQAEVIGGYISSRIKIDITLTPEPYFYDLRDTLNSVSIEMFNANAAAA
QLALSPYLLAKLTGTIFLMVDSEEDRHEKKINIGMSLKFNKRNEEVIGYTKKVEKYWLYS
QKTIDLLREYLERFPELQNLVNTESTNDTFRIEEMFPDKQTRKEKLEKLKSWISEMRSLT
KQKQTFGSMEPCKVAVLEKYMDDFIEINSKHKKIISLNVKSQNLLKPVTKLDKLKADEDA
DTRVLDRVVCIRSSYQVPLGYKGTVISINKSNVDTETVYCVIFDKEFANGVSLGGSPNRG
YKLCRMSFINLSHAIRSGLYKPLVVKVPISQRSNTEKQNTQMSIWEHLQSNSKNLDKISK
NTESKFTLASKETWRRQQLQNESNSVMNSNISQKQGQPVEELKKTQSSQNYNNNKSNNSS
LLNADACEFTTLALKKMLKIQSEDNSIIKTNSKLESIKSFSSAPSGSSYNSKEQMTENNF
SRNNDNSIPYFPAEPSTSMTAALESFYISKGYGTPRYSFTNKVDKNMKLYSASVLLPNGI
TLPGEVKPTHTEATEDVAARALIIIKKIESNQNKAEQVISNNFSQKINPRLVTQQEIAKQ
IPQQQAPSNAYMNWISSYPHQSYQQPIPQQSVQYFKGPQIAYQQFQPQQFLAQYAPNYQV
PRQSYHLPFVSQPTFTQQNVVSGYSLPSQQYFNYPQEMQYSKPVPTVFPNIVNPAQLPQP
PIHWQATPRNVPTANNEILMNPLQQTYQSHTTISHPTYTRSVPKEM
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcagagttcacattacataaagaaaattactatagaaataaattagaatacaatgtt
attactgaagatgtaatgcgttctcaagcagaaggatacattcgagcaatacaatggaat
ttaaactattattataatggttgttgttcttggtcttggtattatcctcatcattatgca
ccatatatttctgatatcaaggactttgaaaatatccagcttgaatttgatttaggccaa
ccattcttaccttttcagcagttgttggcagtattaccatcacttagtaaagagttatta
ccaaaaccttttcaagatttgatgatagaagaagctagtccaattagaatgtactatcct
gaacaatttgaaactgatctcaatggaaaacaacacgaatgggaagctgtcgtattagtt
ccttttattgatgaagaaactctattaaagtctatgaaaatggtcgaacacaaactttca
gatgatgaaaaaaaaagaaattcacatggtcctatgtatctttttaagtataccaaagaa
aatatgggtatagtgtcaaactcaaagtattttccacctattcaagaaagtcatgcacat
agaatattgattaatcgtgaagatattgccgttgatcctaatgatttagttaaaggtttg
tgtccaaatgtaaacttggatgtttatcatgttgggtttcctactcttcatctcatacca
attacagctgaattactcaagaaaggtgtaaaagtttttcaatcttcaagtttgggtgaa
aacatgataattaaaataattaatcaagatgaaaatattgaaggcaatatacaaagtatt
gctaaagagttacttggcaaaactgtgtatgctaattggcctcatcttgaagaaataaaa
gttactgctatatctagcaaatctttacttttgtctcttgacgataatgagcatgtcatt
gttcgagatatggatgattcagcagtacaggaattcaaattactttctcaagggtttgca
aaaacctatatgtctactcgtggtattgatattggaaaaacttctatactgttgcgaggt
caaaaattaaagggaactaaatatataccaagacaagatggcagtggtgtagatttagtg
aaagcttggtgtgaaattccttcaactgtagcatttcaaacagctgtccttgatttagaa
gttaatgacccacatattaaacaaagttattttgctcttgaagagtacttccctgttgga
ggaaatgtttttgtactggatgctccattttacggttgtcaagcagaagtgattggtggt
tatatatcttctagaattaaaattgatataacactcacacctgaaccatacttctatgat
ctccgtgatactctaaattctgtttctattgaaatgtttaatgcaaatgctgctgcagct
caacttgctttaagtccgtatttactagccaaactcactggaacaatttttttaatggtt
gatagtgaagaagatagacatgaaaaaaaaataaacattggaatgagtctaaaatttaat
aagcgaaatgaagaagttattgggtacacaaaaaaagttgaaaaatattggctgtattct
caaaaaactattgatttgttacgtgaatatttagaacgttttccagaacttcaaaattta
gtaaacactgagagtactaatgacacatttagaatagaggaaatgtttccagataaacaa
acaagaaaagaaaaattagaaaaattgaaatcatggatttctgaaatgcgttcattgact
aaacaaaaacaaacatttggttcaatggaaccatgcaaagttgcagttcttgaaaagtat
atggacgattttattgaaataaactctaagcacaaaaaaattatcagtcttaatgtaaaa
tcacaaaatcttcttaaaccagtaactaaattggataaattaaaagctgatgaagatgct
gatacacgtgtgttagatcgtgtagtatgtatacgatcatcttatcaagtcccacttggt
tataaaggcacagttatcagtattaataaatcaaacgttgatactgaaactgtttactgt
gtaatatttgataaagaatttgctaatggggtttctttaggaggtagtcctaatagaggt
tataaactttgtagaatgtcatttattaacttatcacatgctatacgtagtgggctttat
aaaccattagttgttaaagtaccaattagtcaaagatcaaatactgaaaaacagaacact
caaatgagcatttgggaacatttacagtcaaattctaagaacttagataaaatatcaaag
aatactgaatctaaatttacattagcttcaaaagaaacttggcgacgacaacaattacag
aacgagtcaaattcagtaatgaacagtaatatttcccaaaaacaaggacaacctgttgaa
gaattaaagaaaacccagagcagtcaaaattataacaataataaatctaataattcttct
ttattgaatgctgatgcatgcgagttcacaacattggctcttaaaaaaatgttaaaaatt
caatcggaagataactctattataaaaaccaattcaaaattggagtcaatcaagagtttc
tccagtgcaccaagtggttcaagttataatagtaaagagcaaatgactgagaataatttt
agcaggaataatgataacagtataccttacttcccagcagaaccatcaacatctatgact
gctgctctagagagcttttatatttctaaaggttatggaacacccaggtatagttttaca
aataaagtagataagaatatgaaattgtatagtgcatctgtattattaccaaatggcata
actttaccaggagaagtaaaaccaacccatacagaggccactgaagatgtagctgctcgt
gccttgattattataaaaaagattgaatctaaccaaaataaagctgaacaagtgatatct
aataatttttctcagaaaataaatcctagactggttacccaacaagaaatagcaaaacaa
attccacaacagcaagcaccatctaatgcatacatgaactggatatcatcatatccacat
cagtcttaccaacaacctattcctcaacaatcagttcaatattttaagggacctcaaatc
gcatatcaacaattccagcctcaacagtttttagctcaatatgcaccaaattatcaagta
ccaagacagtcatatcatctaccttttgtatcacaacctacttttactcaacaaaatgta
gttagtggatactcgttaccatcacaacagtattttaactatcctcaagaaatgcagtac
tcaaaacctgtacctacagtgtttcctaatattgtaaatccagctcagttgccacagcct
ccaattcactggcaagcaactcctagaaatgttccaacagctaataatgaaattctcatg
aaccctctacagcaaacttatcaatctcatacaactataagtcatccaacttatacacga
tcagtaccaaaagaaatg
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integrated database retrieval system
