Nitratidesulfovibrio vulgaris Hildenborough: DVU_0853
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Entry
DVU_0853 CDS
T00171
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dvu
Nitratidesulfovibrio vulgaris Hildenborough
Brite
KEGG Orthology (KO) [BR:
dvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvu03016
]
DVU_0853
Enzymes [BR:
dvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DVU_0853
Transfer RNA biogenesis [BR:
dvu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DVU_0853
Prokaryotic type
tRNA splicing ligases
DVU_0853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAS95333
UniProt:
Q72DS6
LinkDB
All DBs
Position
complement(942353..943624)
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AA seq
423 aa
AA seq
DB search
MKRQLGGQCTGSGDTDAKRPYHAPMNRHGMNRRGQNRTGEDRPEPAGTASPRQTRDAAKD
TRLALTLPPDAIDDKAWEQIENVLSLDCLVRLAIMPDVHAGYDLCIGGVALLAGTISPGF
VGYDIGCGMCHVNTGRTVDELLPDALSRQRLFDRILHDIPVGTDMRGPGEFDAPRFLSAS
GDKGLTASVVAKAARQMATLGGGNHFIEVGVNSRSEVGITLHSGSRRPGWDIAAWYMRQG
RLFALRTPMGQAYLKDMQWAQEYALANRRAMLALVLKAFPSLDEATISHLLASTINENHN
HAEVDGANVLHRKGATPAASGQPGIIPANQRDGVYITRGLGNAYYLSSASHGAGRVMSRQ
KARAHIEQMTFERQMHGILCRTDKGVLDEAPDAYKPIAPVLAAQDGLLVDVVDHFRPVVV
IKG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaagagacaactcggcgggcaatgtacggggtcgggtgacacggatgcgaaacgccct
tatcatgcacccatgaatcggcatggcatgaacagacgaggccagaacaggacgggcgaa
gaccgccctgaaccagccggtacggcgtcaccgcgccaaacccgtgatgcggccaaggat
acaaggctcgctctcacgctcccccctgacgccatcgacgacaaggcgtgggaacagata
gagaacgtcctctccctcgactgtctcgtcaggctcgccatcatgcccgatgtccatgca
ggatacgacctgtgcatcggcggagtcgcccttctcgcaggcaccatcagtccgggcttc
gtcggctacgacatcggttgcggcatgtgccacgtcaacacaggtcgcacagtcgacgaa
ctgctgcccgacgcgttgtcgcgtcagcgactgttcgatcgcatcctgcacgatatcccc
gtgggaaccgatatgcgagggcccggagagttcgatgctccgcgcttcctttcagcatcc
ggcgacaaggggctgacggcaagtgtggtggcgaaggccgcgcgccagatggcgaccctc
ggtggaggcaatcatttcatcgaggtgggggtcaacagccgaagcgaagtcggcatcacg
ctgcattccggctcacgccgtccgggatgggacatagcagcgtggtacatgcggcaagga
cgcctcttcgcgctgcgtactcctatggggcaggcttacctcaaggatatgcaatgggcg
caggagtacgcgctggccaacaggcgtgccatgctcgcacttgtcctcaaggcctttcca
tcgctggacgaagccaccatctcgcacctgctggcatctacaatcaacgagaaccacaac
cacgccgaggtcgatggcgcaaacgtactgcatcgcaaaggtgcgacccccgccgcgtcg
ggacaaccgggcatcatccccgccaatcagcgtgacggcgtatacatcacgcgaggcctc
ggcaacgcgtactatctttcgtcggcttcacacggcgcaggacgggtcatgtcgcgacag
aaggcgcgcgcccatatcgagcaaatgacattcgagcggcagatgcacggcattctctgc
cgcacagacaagggagttctcgacgaggcccctgacgcctacaaacccattgccccggtt
cttgccgcacaggacggcctactcgtggatgtggtcgaccacttcagaccggttgtggtg
atcaagggctga
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