Nitratidesulfovibrio vulgaris Hildenborough: DVU_0904
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Entry
DVU_0904 CDS
T00171
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dvu
Nitratidesulfovibrio vulgaris Hildenborough
Pathway
dvu03410
Base excision repair
dvu03430
Mismatch repair
dvu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DVU_0904 (recJ)
03430 Mismatch repair
DVU_0904 (recJ)
03440 Homologous recombination
DVU_0904 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvu03400
]
DVU_0904 (recJ)
DNA repair and recombination proteins [BR:
dvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DVU_0904 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DVU_0904 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DVU_0904 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AAS95384
UniProt:
Q72DM5
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All DBs
Position
995665..997380
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AA seq
571 aa
AA seq
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MKRWIYRPEVEGALPPSASLAERLGISDLLLRLLLRRGLSSVQDMDVYLSPQLRHLAPLE
EWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGVDVRHHLPDRRAE
GYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPPEVLPPAHA
ICNPRLACCPCPALAGVGVAFFVMAAVNAALGERSGRRYDMREVLDLVALGTLADVVDLG
GQNRILVKNGLLKIAEARRPGMAALKAVAGYNPSASLGAGQVVFGLAPRINAAGRLGEAE
MALQLLRARKHGEAAQLAQRLDAMNTDRRVEEDRILEEAKRQAESQAASRMGFVLHGEDW
HPGVIGIVASRIVEAYYRPTLILCTEGETLKGSGRSVSEFDLHAGLSQCADLFLGFGGHR
QAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGDLGFEHASDFTVLKELEMLQ
PFGTGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCGVTLHAKAWRQSGEFSDRLR
GTRIRLAYTPRIDRYSGAASVDLRIRDWQPA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctggatataccgaccggaggtggaaggcgcactgccgccatccgcctctctc
gccgaacgtctcggcatctcggacctgctgcttcgcctgttgctgcggcgcggcctttca
tccgttcaggatatggacgtctacctcagcccgcagttgcgccacctcgccccgctggag
gaatggcccggccttgctgaagcggctggcgtcatcacggcgggcatcaccgccgggatg
ccctttgccgtatggggcgactatgacgtggacggggtgacctccacagcccttgtgcat
gacgtactcgagttccatggcgtggatgtgcgccaccatctccccgaccggcgggccgag
ggctacgggctgaatgtggagtggatagagaggctcgctgccgatggggtgcgtctgctt
ctcacggtggactgcggcatatccgatgtcgtgcccatctcacgagcccgtgaactgggc
atgaccgtggtcgtctccgaccaccacctgccgccggaggtcttgccgcccgcccatgcc
atctgcaatccgcgtctcgcctgttgtccgtgtccggcgctggcgggcgtgggggtcgcg
ttcttcgtcatggcggcggtcaatgccgcattgggagaacgctccggcaggcgttacgac
atgcgcgaggtgctcgaccttgtggcgttggggacgctggcggatgtggtcgacctcggt
ggtcagaatcgcatcctcgtcaagaacggactcctgaaaatagccgaagcccgcaggccg
ggcatggcggcgctcaaggcggttgcgggctacaatccatcggcctcgctgggggcgggg
caggtggtgttcgggcttgcgccgcgcatcaatgcggctggtcgccttggcgaggcggag
atggcactgcaactgttgcgtgcccgcaaacatggtgaggcggcgcagcttgcgcagcgc
cttgacgccatgaacaccgaccgccgtgtggaggaggaccgcatcctcgaagaggcgaaa
cggcaggccgagtcgcaagccgcgtcgcgcatggggttcgtgctccatggcgaggactgg
caccccggcgtcatcggcatcgtcgcctcgcgcatcgtggaggcctactacaggcccaca
ctcatcctgtgcacagaaggggagacgttgaaggggtcggggcgttcggtgtcggaattc
gacctgcatgcagggctttcacagtgcgccgacctgttccttggcttcggggggcacagg
caggccgccggcatgagcctgaagacctcggcgctcgatgcattgcgcgaacggttcgat
accgtggtgcgtcaggccctcggcgatacgccgttgacggcatcgctgaagctggatggc
gacctcggcttcgagcacgcttcggatttcacggtgctcaaggaactcgagatgttgcag
cctttcggcacaggcaacgccgaacccgtcttcgcgtcgcctccgcttcttgtgcgcggg
ttgcgacgcttcggcaaggcacgggaacatgtggaactcgaactcaccgacgagtcgtgc
ggggtgacgctgcatgccaaggcatggcggcagtccggagaattctccgacaggctgcgt
ggaacgcggatacgcctcgcctacacgccgcgcatcgacaggtattccggtgcggcgtcc
gtcgacttgcggatacgagactggcaacccgcgtga
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