Nitratidesulfovibrio vulgaris Hildenborough: DVU_2929
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Entry
DVU_2929 CDS
T00171
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dvu
Nitratidesulfovibrio vulgaris Hildenborough
Pathway
dvu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DVU_2929 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvu03021
]
DVU_2929 (rpoC)
03400 DNA repair and recombination proteins [BR:
dvu03400
]
DVU_2929 (rpoC)
Enzymes [BR:
dvu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DVU_2929 (rpoC)
Transcription machinery [BR:
dvu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DVU_2929 (rpoC)
DNA repair and recombination proteins [BR:
dvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DVU_2929 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AAS97401
UniProt:
Q727C6
LinkDB
All DBs
Position
3028905..3033062
Genome browser
AA seq
1385 aa
AA seq
DB search
MTLDDLFTVRGSAANIANIRNLKAIQITIASPENIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGED
ALTVGMGAEAVRSLLEELNLEELRVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKP
EWMVMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEE
VVREYPIMLNRAPTLHRLGIQSFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVV
AAYDAGVVALHARINVRMEDGKVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVS
TAYRDAGTKATVILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIER
QYRDGIITRTEKYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMM
STSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLAD
TALKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLL
YPVYDPETRDLLFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLAR
GHIVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKA
VRNRDGQYMVMGKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNE
PFVSEVDGVIRFSDIVEGKTFQEKMDEATRMTTQTIIEYRTTNFRPSISICDEHGEVKMR
GNNIPATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPK
DMAVVSEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTE
GHPELHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGT
TFLVGEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVL
TEASLRGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRERPDKFLEDLEENPL
LVDIY
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgaccttagacgatctgttcaccgtccggggctcggcggccaacatcgcgaacatacgc
aacctgaaggcgattcagataaccatcgcttcgcccgagaacatccgcgagtggtcgtac
ggcgaggtcaagaagcccgagaccatcaactaccgtacgttcaagcccgagcgcgatggc
ctcttctgcgccaagatattcggccctgtgaaggactacgagtgcaactgcggcaagtac
aagcgcatgaagcaccgtggcatcgtctgcgagaagtgcggcgtcgaggtcatcgcctcg
aaggtgcgccgtgaacgcatgggccacatcgaactcgccgcgcctgtcgcgcacatctgg
ttcctgaagaccctgccgtccaagatcggcacccttctggacatgacgatggccgacctt
gaaaaggtgctgtacttcgactcgtacatcgtgctcgatccgggcagcaccaacctcacc
aagatgcaggtcatctccgaagaccagtatctgcaggtcatcgaccactacggcgaggac
gccctcaccgtgggtatgggcgccgaagccgtgcgctcgctgctcgaggagctcaacctc
gaagaactgcgcgtgcagcttcgcgaagaatcgcaggccaccaagtcgcagaccaagaag
aagaagctcaccaagcgcctgaagatcgtcgaggcgttcctcgaatcgaacaacaagccc
gagtggatggtgatggaagtcattcccgtcattccgcccgagcttcgtccgctcgtgccc
ctcgacggcggtcgcttcgccacgtccgacctcaacgacctgtaccgccgcgtcatcaac
cgcaacaaccgcctcaagcggctgatggaactgggcgcgcccgacatcatcatccgcaac
gaaaagcgcatgttgcaggaagccgtcgacgccctgttcgacaacggtcgccgtggtcgc
gccatcaccggcaccaacggccgtccgctcaagtcgctctccgacatgatcaagggcaag
cagggccgcttccgtcagaacctgctcggcaagcgcgtcgactactcgggccgttcggtc
atcgtcgtgggccccaagctcaagctgcaccagtgcggcctgcccaagaagatggccctc
gaactgttcaagcccttcatctactccgagctcgagaagaggggcctcgcctccaccatc
aagagcgccaagaagatggtggagcgtgaagaactggtcgtgtgggacatcctcgaagag
gtcgtgcgcgaatatcccatcatgctcaaccgtgcgcccacgctgcaccgtctgggcatc
cagtcgttcgaaccgctgctggtcgaaggcaaggccatccagctgcacccgctcgtgtgt
tccgcctacaacgcggacttcgacggtgaccagatggccgtgcacgtgcccctctccgta
gaggcacagatagaatgccgcgtgctcatgatgagcaccaacaacatcctgtcgcccgcc
aacggttcgcccgtcatcgtgccttcgcaggacatcgtcctcggtctgtactacatgacc
gtcgaccgttccttcgaaaagggcgagaacatgtcgttctgcgccccgtgggaagtggtc
gccgcctacgacgccggcgtggtcgccctgcatgcccgtatcaacgtgcgcatggaggac
ggcaaggtcgtccgcaccaccgtgggccgcatcctcgtgtgggagcttctgccccactgc
gtgcccttcagcatggtcaacaccacgctgaccaagaagaacatcgcccgcctcgtgagc
accgcctaccgtgacgccggcaccaaggccaccgtcatcctgtgcgaccgcctcaaggac
gtgggttacgaatacgccacccgcgccggtgtcaccatcgccgtgaaggacctcaccatc
ccctccaccaagaaggggctgatcgagaccgcacagaacgaggtggacgacatcgaacgc
cagtaccgcgacggtatcatcacccgtacggaaaagtacaacaaggtcgtcgacgtgtgg
acgaaggccacgcaggacgtctccaacgagatgatccgcgagatctcctccgacatcgtc
gaagacccgcgcaccggagcgaaggaagccaacagcagcttcaactccatctacatgatg
tccacctccggcgcgcgaggcaaccaggaccagatgcgccagcttgcaggcatgcgcggt
ctgatggccaagccctcgggcgagatcatcgagaccccgatcacctcgagcttccgcgaa
ggtctctcggtgctccagtacttcacctcgacacacggtgcacgtaagggtctcgccgac
accgcactcaagacggcgaactccggttacctcacccgtcgactcgtcgacgtcgtgcag
gacgtgatcgtcagcgaacacgactgcggcaccgtcgacggcatcgaactgacgcacatc
aaggaaggcggcgagatcaagatcccgctggccgaccgtgcccttggtcgcgtgctgctg
taccccgtgtacgaccccgagacccgcgacctgctcttccccgagaacaccctcgtcgac
gagaacgtcgccaaggtgctcgtggaacgtgaagtcagctcggtgatgatccgctcggcc
ctcacctgccagagcgaccgcggcatctgcaccctgtgctacggccgcgacctcgcccgc
ggacacatcgtcaacatcggcgaaacggtcggcatcatcgccgcccagtccatcggcgaa
cccggcacgcagctcaccatgcgtacgttccacatcggtggtacggcgtcccgcgagatc
gaacgttcgagcttcgaggcgcagcaccccggtcgcgtcatcctgtcccgcgtgaaggct
gtccgcaaccgtgacgggcagtacatggtcatgggcaagagcggccagctcgccatcgtc
gacgatcagggccgtgagcgtgagaagtacacgctgcccaacggctcgcgcctgctcgtg
acggagggtgaagagattcgcaagggccagattctggccgaatgggaccccttcaacgaa
cccttcgtctcggaagtggacggtgtgatcaggttctcggacatcgtggaaggcaagacc
ttccaggagaagatggacgaagccacacgcatgaccacgcagaccatcatcgagtaccgt
accaccaacttccggccctcgatatccatctgcgacgaacacggcgaagtgaagatgcgc
ggcaacaacatccccgccacgtactctctgcctgtcggcgccatcatcatggtcaagaac
gggcaggacttgcaggccggtgacatcatcgcccgtaagccccgcgagacctcgaagacc
aaggacatcgtcggcggtctgccgcgcgtcgccgaactcttcgaagtccgcaagcccaag
gacatggccgtggtctccgaaatcgcaggtatcgtcacctacgccggagagaccaagggc
aagcgcaagctcgtggtcacccccgaaatcggtgaggccaaggaatacctcgtgcccaag
ggcaagcacatcaccgtcaccgacggcgacttcgtggaagcgggcgacctgctgaccgaa
gggcatcccgaactgcacgacatcctgcgcacccgcggcgagaagtacctcgcccgctac
ctgaccgatgaaatccaggaagtgtaccgcttccagggcgttgccatcgacgacaagcac
atcgaagtcatcgtgcgccagatgctgaagaaggtcaccgtccttgatccgggcggaacg
accttcctcgtgggcgagcaggtcgacaagggcgaattccgcgtcgagaacacccgcgcc
atgggcgagggacgcaccccggctacggccgaaccgctggttctcggtatcacgcaggca
tcgctgaccacctcgtcgttcatctcggcagcctccttccaggagaccaccaaggtgctc
accgaagcctcgctgcgtggcaagatggactacctgcgcggtctcaaggagaacgtcatc
gtgggtcgcctcatccccgccggtacgggttaccgcgagtatgtcaacaccgacatcctc
gtgcccgaacagcgtgaacgccccgacaagttcctcgaagacctcgaagagaaccccctg
ctggtggacatctactag
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integrated database retrieval system
