Nitratidesulfovibrio vulgaris Hildenborough: DVU_3055
Help
Entry
DVU_3055 CDS
T00171
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dvu
Nitratidesulfovibrio vulgaris Hildenborough
Pathway
dvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVU_3055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvu03019
]
DVU_3055
03009 Ribosome biogenesis [BR:
dvu03009
]
DVU_3055
Enzymes [BR:
dvu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DVU_3055
Messenger RNA biogenesis [BR:
dvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DVU_3055
Ribosome biogenesis [BR:
dvu03009
]
Prokaryotic type
rRNA processing factors
DVU_3055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAS97526
UniProt:
Q726Q1
LinkDB
All DBs
Position
3181505..3182974
Genome browser
AA seq
489 aa
AA seq
DB search
MTTAKKGKRKMYISVLPGEQVEVALSEDGAVTEYYVEMLHQAKTKGNIYKGVINNIDTNL
QAAFVNYGAEKNGFLQIDEVHPEYYISPHDPTKGKKYPLMQKVLKAGQEVLVQVVKEPTG
NKGAFLTSYLSLPGRFLVLTPGREQIGVSRKVEDDEERSRLREMLEGLSAGPGLGVIVRT
VSAGTSKTTLQRDLQFLKRLWKDVRKKGTTEQTPCQIYQEPDLATRSVRDYLTDDVSEVW
VDDAATAELIREFVTLVFPRKASLVKLHTDPERTLWERFGIRKQLDQIYSREVILPSGGR
LVFDQTEALMAIDINSGKIAGKTNFESMALKTNTEAAESIAQQLRLRDIGGQVVIDFIEM
RDHNHWREVEKTLRNAMKGDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCRGS
GLRRNMEWQSLQALRELHRQLRALPQGQCVHVFETSPELAFYLLNHKRERLLELERRFNL
RLEVRPTGK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagcaaagaagggcaagcgcaagatgtacatcagcgtgctgccgggagaacag
gtcgaagtggccctctccgaggacggcgccgtcacggaatactacgtggagatgctgcat
caggccaagaccaagggtaacatctacaagggtgtcatcaacaacatcgacaccaacctg
caagccgccttcgtcaactacggggccgaaaagaacggctttctccagatagacgaggtg
caccccgaatactacatctcgccgcacgaccccaccaagggcaagaagtacccgctcatg
cagaaggttctgaaggcgggtcaggaagtgcttgtgcaggttgtgaaagaacccaccggg
aacaagggcgcctttctcacttcgtatctttcgctgccgggccgctttctcgtgctcacg
ccggggcgcgaacagattggcgtctcccgcaaggtcgaggacgacgaggaacgcagccgc
ctgcgcgagatgcttgagggcctcagcgccgggccgggccttggcgtcatcgtccgcacc
gtgagtgccggtaccagcaagacgaccctgcagcgcgacctgcaattcctcaagcgcctg
tggaaagacgtccgcaagaagggcaccaccgagcagaccccttgccagatttatcaggag
cccgacctcgccacccgttcggtgcgcgactacctcaccgacgacgtgtccgaggtatgg
gtcgacgacgcggccacggccgaactcatccgcgaattcgtcacgctggtgttcccccgc
aaggccagcctcgtgaaactgcataccgaccccgaacgcaccctgtgggaacggttcggc
atccggaagcaactcgaccagatctactcgcgcgaggtcatcctgccttcgggcgggcgt
ctcgtcttcgaccagaccgaagcgctcatggccatcgacatcaactccggcaagatcgcg
ggcaagaccaacttcgagtccatggccctcaagaccaataccgaagccgcagaatccatc
gcccagcagttgcgcctgcgcgacatcggcgggcaggtggtgatcgacttcatcgagatg
cgcgaccacaaccactggcgcgaggtggaaaagaccctgcgcaacgccatgaagggcgac
cgcgcccggcatgacgtgggcaagatgagccgcttcggcctgctgcaggtggtgcgccag
cgcacgggctcgtcggcgctctccatcaccatggaggcgtgcccctgctgccgcgggtcg
ggcctgcgccgcaacatggagtggcagtcgcttcaggcattgcgcgaactgcaccgccag
ttgcgtgccctgcctcagggacagtgcgtgcatgtgttcgagacatcaccggaactggcc
ttctacctcctcaaccacaagcgcgaacggctgctcgaactcgagcgccgcttcaacctg
cgtcttgaggtgaggcccaccggaaagtag
DBGET
integrated database retrieval system
