Nitratidesulfovibrio vulgaris Hildenborough: DVU_3310
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Entry
DVU_3310 CDS
T00171
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dvu
Nitratidesulfovibrio vulgaris Hildenborough
Pathway
dvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVU_3310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvu03019
]
DVU_3310
03009 Ribosome biogenesis [BR:
dvu03009
]
DVU_3310
Enzymes [BR:
dvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DVU_3310
Messenger RNA biogenesis [BR:
dvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVU_3310
Ribosome biogenesis [BR:
dvu03009
]
Prokaryotic type
rRNA helicases
DVU_3310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
AAS97778
UniProt:
Q725W5
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All DBs
Position
3486594..3488192
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AA seq
532 aa
AA seq
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MESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFG
LPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA
LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV
QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD
AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA
TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ
RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA
ATLLRMIMQRDRIDLPGARQTDDIGTGRVRLFFNVGRRMRITPRDLVGAIAGETGISGRS
IGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFRLAVEQASPREGQDRAA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtagaatcgttcaaggacctccccctcgaagaggaactgctcaaggccatc
gaagaactcggcttcaccgagccctcgcccatccagtccatcgccatcccccgcctgctt
gaaggccgcgacgtgataggtcaggcccagaccggcaccggcaagaccgccgccttcggt
ctgcccctgcttcagcgcatcgacgccgccgaccgctcggtacaggccctcgtgctctgt
cccacccgtgaactggccctgcaggtggccaatggcctcaccgccctcgccaagcatctg
cgcggggtacgcatcctctccgtgtacggcggccagcccatcgaaccgcaggcctccgcc
ctgcgccgtggcgcacaggtcgtcgtgggtacgcccgggcgcatcctcgaccatatcaac
cgcggcaccctgcaactcggcgtcgtgcgcatgaccgtgctcgacgaagccgacgaaatg
ctcgacatgggctttcgcgaggacatcgaacgcatcctcagcgaaatgcccgaatgggtg
cagtctgcgttcttctccgccaccatgcccgacggcatcctcgaactcgcccgccgcttc
ctgcgcgaacccgagttgctgcgcgtgacgcgccgccagcttaccgtcgccaatacggaa
caggcatggttcgaagtgcggcccttccgccgcgtggacgccgtatgccgaattttcgac
gcctacattccgcgcaaggccatcgtcttccgcgccaccaagcagggcgtcgatgaactg
gccgccgcactccagcagcgcggcatcctcgccgacgccctgcacggcgacctcaaccag
acccagcgcgaacgtgtcatgtcccgcttccgcgccgggggcatctccgtgctggtcgcc
accgacgtggcagcccgtggtctggacgttgacgacgtggacaccgtcatcaacttcgac
ctgcccaacgaccccgagacctacgtgcaccgcataggccgcactggccgtgcaggccgc
accggcagggccttctcgttcgccgcaggtcgcgacgtgtacaagttgcgcgacatccag
cgcgtgaccgggtcgcgcatcgaccgccgcgccatgcccaccgccgccgacgcctcccgc
gcccgcaccgggcagttgcttgaggaagtcgccgccgggcttgccagcgccgagacctcg
gcctgcctgcctgtggtggagaagctcatcgccgaaggcgccgacccgacccagcttgcc
gccacgctgctgcgcatgatcatgcagcgcgaccgcatcgacctgccgggtgcccgccag
accgatgacatcggcaccgggcgcgtgcgcctgttcttcaacgtggggcgccgtatgcgc
atcaccccgcgtgacctcgtgggcgccatcgccggtgagacgggcatctccggccgttcc
atcggttccatcgaaatccacgaccgcttctcgttcgtggaagtggatgcctccatcgcc
cccgaagtggtgtcggtgatgcacggcaaccagattcgcggcttccgcctcgccgtggaa
caggcaagcccccgtgagggtcaggaccgcgccgcttaa
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