Diabrotica virgifera virgifera (western corn rootworm): 114329174
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Entry
114329174 CDS
T09922
Name
(RefSeq) collagen alpha-1(XV) chain
KO
K06823
collagen type XVIII alpha
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dvv04147
]
114329174
00535 Proteoglycans [BR:
dvv00535
]
114329174
00536 Glycosaminoglycan binding proteins [BR:
dvv00536
]
114329174
Exosome [BR:
dvv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114329174
Proteoglycans [BR:
dvv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
114329174
Glycosaminoglycan binding proteins [BR:
dvv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114329174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114329174
NCBI-ProteinID:
XP_050513074
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Position
7:complement(242027387..242925772)
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AA seq
1117 aa
AA seq
DB search
FRLDVILLIVLSLLGPVVSDDPFSLPPSFTDGAHSASEFEVFNEYDLLGAISIPFPDPKT
QYIEENGHDGFPAFGFRSGSDVKIAHRQILPEKLSSEFSILISAKPKSRRAAFIFAVVNP
YDTVVELGVRIAPDGLSTSVLSLYYTDFTQISSRSIANFTVPKFYNKWMSFAFRVSLENV
TLFFNCNETETILVRRNPLELVFDSASTLYIAQAGPKFGEPYEGAIDQLKIFRDPNMAAE
QCKTDFQGFHISEDGSIPDIERMDYDGSYREGSGTEDLGVFPPPPPPPDGKTCFCDSDKE
HCCNSLYDGDKAAAGYYRGEKGDRGPRGPPGESIRGPPGPPGPSGLPGVPAPEAVCTCNL
TSIISTIKSQANIPYTPIEGKPGSPGASGLPGPPGDRGPIGPPGDKGERGEKGPQGSEGY
QGAKGEPGRDGTPGLPGPPGSPGPPGPVEFENVDPSWKPRGPFKDTVLGGSMVRPGVPGP
KGEPGKQGPIGPRGEKGPAGSKGAHGEPGLKGERGDRGIPGEKGVQGKRGDDGAPGMDGI
PGTLGKHGEKGEKGSTGNPGPAGPPGPSGIHIAGGTAEEAIKIMPGLPGAKGDTGERGPK
GDKGDTGEAGIPGVSGMPGTEGIPGEKGDPGIDGATGPMGSPGSKGDKGERGLPGSIVTA
DGTDNIMTIKGQKGDMGKRGRRGKPGPVGPPGPPGKLGEIGLPGWMGRPGIPGVPGTKGT
KGDSGGHKGDKGDKGDLGPAGKDGTPGLPGPPGPRSSDETTRYIPVPGPPGPPGPPGPSG
MPGLSITGPKGEPGSPAYGETAHYSRPGRATAFPPLHQPSEQQLASAHVVPGAVTFQDKS
AMTKMTSASPVGTLAYVIEEEALLVRVNNGWQYVALGSLLPVTTPAPPTTSSPQIRPPFE
ASNLINHISSKPADVSHLRLAALNEAYTGDIHGVRGADYACYREARRAGLRGTFRALLSS
RVQNVDSIVRQADRKLPVCNLRGEVLFNSWAEIFNGDGGAFPHPPRIYSFSGKNVLSDFS
WPNKAVWHGALLTGERALDTSCDAWHTASKEKVGLAGSLKGPRLLEQAPYSCDKRLILLC
IEATTEQFVQRRRRSVYEESTELLNEEEYQDLLNSIH
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttcagattagacgtcatattactgatcgtgttatcactacttgggcccgtagttagtgat
gatcccttctccttgccaccatccttcacggatggagctcacagtgcttcggagttcgaa
gtattcaatgaatacgaccttttgggggcgatctcaataccgttccccgatcccaagacg
caatacatcgaagaaaacggccacgacggatttcccgccttcggatttagatccggatca
gacgtgaaaatcgctcacaggcaaatactgccggagaaattgtcttcggaattttccatt
ttaataagtgccaagccgaaaagcagacgggcggcattcatcttcgctgttgttaatcct
tatgatacggtagtggaactaggtgtcagaatagctccagacggactcagtacatctgtc
ctcagcctatactacacagactttacccaaattagttcccgtagcatagcaaatttcacc
gtgccaaaattctacaacaaatggatgtcgttcgcttttagagttagcctagaaaacgtg
acgttattttttaactgtaacgaaaccgaaacgattctagtccgaagaaatcccttagag
ttagtattcgattcagcgtcgacattgtatatagctcaagctggaccgaaatttggtgaa
ccgtacgagggtgctatagatcaactgaaaatattccgagatcccaacatggcggcggaa
caatgcaaaacggatttccagggttttcatatttcggaagacggaagtattcctgatata
gaaagaatggactacgatggatcgtacagagaaggcagcgggacagaagatctaggagtt
tttccgccgcctccaccacctcctgatggtaagacttgcttttgtgattctgataaagaa
cattgttgtaattctctttatgatggtgacaaagctgccgctggatattatcgaggggag
aagggagatcgagggcccaggggaccaccgggagaatcaattagaggtcctcccggacct
cccggcccatcaggtcttccaggagtaccagcaccagaggctgtctgcacatgcaactta
acgtcaatcattagcacaattaaaagccaggccaacattccctatacgccaattgaagga
aaacctggatcacctggagcgagtgggctgccaggacctccaggagatagaggccccatc
ggtccgcccggtgacaaaggtgagcgaggagaaaaaggtcctcaaggttcggaaggatat
cagggtgctaagggagagccaggaagagatggaacgccaggactgccaggcccacctgga
tcgccagggccgccggggcctgtcgagtttgaaaacgtagatccaagctggaagccaagg
ggacccttcaaggacaccgtcttaggaggttcaatggtaagaccaggagtaccagggccc
aagggcgaaccaggcaagcaaggccctataggccccagaggagaaaaggggccagcaggt
tcgaagggtgcacatggagagccaggccttaaaggtgaacgtggtgataggggtattccg
ggcgagaaaggcgtacagggtaaaagaggtgacgatggagcgcctggtatggatggtatt
cccggtactctgggaaaacatggagagaaaggtgagaagggtagcactggaaatcctggt
cctgcaggaccacctggaccatctgggatacatatagcgggtggtactgctgaggaagcg
attaaaattatgcctggattgcctggagctaaaggggatacaggagagaggggaccgaag
ggagacaaaggtgatactggagaagctggtatacctggtgtatctggaatgccaggaacc
gaaggtattcctggtgagaagggagacccaggtattgatggagcgacagggccaatggga
tctccaggttccaagggagataaaggggagagaggactaccgggttcaattgtaactgca
gatggaaccgataatattatgacaattaaaggtcagaaaggtgatatgggtaagcgagga
agacgaggaaaacctggtccagttggtccaccaggtccgcctggaaaacttggagaaatt
ggactgccaggatggatgggaaggcctggaataccgggagttccaggaacgaaaggaacg
aagggcgattcaggaggacacaagggcgacaagggcgataagggtgacctgggtccggca
ggtaaggatggcacgccgggccttccgggtccaccgggaccgcgatcatcagacgaaacg
acgaggtacattccagtgccaggacctccagggccccccggtcctccaggtccttcgggg
atgccaggattgtctataacaggccccaaaggcgagccgggcagccccgcttacggagaa
actgctcactacagccgaccaggaagggcaacagcttttcctccactacatcagcctagc
gagcaacaactagcttcggcgcacgtggttcctggtgctgtgaccttccaagacaagagc
gcgatgaccaagatgacgtcagctagtccggtcggaactctagcgtacgtcatcgaagag
gaggcattgctagttagagttaataatggatggcaatatgttgcgttgggttcattactt
ccagtaacaacaccagcgccacctacgacaagcagtccccaaatacggccgccgttcgaa
gcgagcaacctcatcaatcacatatcctccaagccggcagatgtttctcatttgcggctc
gcggcactgaacgaggcgtacactggcgacatccacggcgtccggggcgccgattacgcc
tgttatcgcgaggcgcgccgagccggtctccggggaaccttcagggctctgctctcttcc
agagtgcagaacgtagattctatcgtcagacaggccgatcgcaaattgccagtgtgcaat
ctcagaggggaagtgctctttaattcctgggctgaaatcttcaacggcgacggtggagcg
ttccctcatccccccagaatatactcgttcagcggcaaaaacgttctctctgacttttca
tggcctaacaaagccgtctggcacggggctcttttgaccggcgaacgagccttagacacg
tcgtgcgatgcctggcatacggcctctaaggaaaaagtcggactggccggcagcctgaag
gggccaagactcttggaacaagcgccctattcttgcgataaaagacttattttactttgc
atcgaagctactacggagcagtttgtgcagagaagaaggagaagcgtttatgaagagagt
actgaattgctcaacgaagaagaataccaagacctgctgaattccattcattaa
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