Diabrotica virgifera virgifera (western corn rootworm): 114332579
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Entry
114332579 CDS
T09922
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114332579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvv03019
]
114332579
Messenger RNA biogenesis [BR:
dvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114332579
mRNA degradation factors
5'-3' decay
Decapping complex
114332579
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
114332579
NCBI-ProteinID:
XP_050501883
UniProt:
A0ABM5JVB5
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Position
3
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AA seq
764 aa
AA seq
DB search
MANSFFDFDTLNNGDNLLPPDEDDCLENEEEYDALNDETFGGLEDTSSLDDWEQQHEQYA
EIAESSKHSEQIENSLSQLVLDDEPEERVSLSSSVWSYTPSTKNGDIFNSSILSSLQKAS
KAFIESHSDAPSSNHDLPLLPPTPILPAQPKKICTVEELEKSLINSSKNTVPSTTAASAV
LLPPQPQQQQVPRPVLPLPGYHHQGHGFHPMLQHTIPNTRLPPPGLPPMNIPPPGLRPLS
HLPILSPVTGRPILPHPQFMQNGPPRPPGFMYPPGANQNQYPIGFPFPPPLARAMTNMNQ
QQQRIHHNNINQQHHQQPHQQIHHQSLQHQQKERSRHDSGSYRHHQQRDQEPKDEYAGLM
TMREKQWLLNIQMLQLNTGTPYFDDYYYTIFKERKLKGNNKENSNERNPHHKRQHRNSDR
QENANTLTPRVYTPLQFENSLGKLQCGSVTAPRKIIDMDIVTPDKDSDGPQVSRDTRKTK
QLLLELEALYALLLKAEDINNPLYISNMDKLREMKQKQRLRELELAPTPEQKREVLRLFK
LESEIVLENQYDYIVKIFQGFVQEDKICSFLNIRKGKMLLLRLLPHLTLDMFPSQLLELW
CKVLLSIPIIGRRDTAGDNILPKLYPFLKRYVQSSNMSDVLEIATGLVEVVRQESNRSTP
LSHVGKSPLYFVLLNKFGVSALVVLLIRAECLLSSDSVTEKQQNTWSNFLVSWAQITESV
SKIPSPIDTIPSPIFDKHCNRFKILKPDKRSLLEKYFVDCNSNV
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggctaattcatttttcgactttgatacattaaacaatggggataatttacttccacct
gatgaagatgactgtttagagaatgaagaagaatatgatgcacttaatgatgagacattt
ggaggtcttgaggatacttccagcttggacgattgggaacagcagcatgaacagtacgca
gaaattgctgaaagttccaaacacagtgagcaaatagaaaactccctatcacaattagtt
cttgatgatgaacctgaagagcgtgtttcgctatcaagttccgtttggtcatacacacct
tccaccaaaaatggagatatattcaacagctcgattttgtcatcgttacagaaagcttca
aaagcatttattgaatcccacagcgatgctccctcctcaaaccacgatctaccattacta
ccgccaacaccaatattgcctgcacaacctaaaaaaatttgcaccgtcgaggaattggaa
aagagccttattaactcaagtaaaaacacagtgccgagcacgacagcggcgagtgctgtg
ttgctaccaccacaaccgcagcagcagcaagttcccagaccagttctacctctgcccggt
taccaccatcaggggcatggatttcatccgatgctacagcataccatcccaaacacgaga
cttccaccacccggattgccaccgatgaatatcccacctccaggcttacgaccgttaagt
catcttccgattttatcgcccgtaaccggaaggccgatactgccacatccacaattcatg
caaaacggacctccaaggccgcctgggttcatgtatccaccaggtgccaaccagaatcaa
taccctattggttttccgtttcctcccccactcgctcgtgctatgacgaatatgaatcag
caacagcaacgtatacaccacaacaacatcaatcaacaacaccatcagcagcctcatcag
caaatccaccatcagtctctccaacaccagcaaaaagaaagatcaaggcatgatagtgga
agctacagacaccaccagcaaagagaccaagaaccaaaggacgaatacgctggtcttatg
acgatgagagaaaaacaatggttgctaaatattcaaatgctgcagttaaataccggcacg
ccatattttgatgattactattacacaatctttaaggagaggaaattgaaaggtaacaat
aaagaaaactctaacgaaagaaacccgcatcataaaaggcaacacaggaacagtgatagg
caagaaaatgcaaatacactaacgccacgggtctatacgcctttgcaatttgaaaattct
ttgggaaaattacagtgtgggtcggtcacggctcctcgaaaaatcatcgatatggacatt
gttactcccgacaaagacagtgacggtcctcaggtatcgagggatacacggaagacgaag
cagctgttgttggaattagaagcattgtacgcattactgcttaaggcggaagatatcaat
aatcctttgtatataagcaatatggataagttaagagaaatgaagcagaaacaaagatta
agagagttggagttagcccccacgccagaacaaaaacgagaagtcctaagactgtttaag
ttagaaagtgaaattgttttagaaaatcaatacgactatatagtcaagatttttcaaggt
tttgtacaagaagataagatctgtagtttccttaacattcggaaaggaaagatgctgcta
ttaagacttttaccgcatctaacgttagacatgttcccaagccaactgttggagttgtgg
tgtaaagttttgctcagtatacccatcataggaagaagagacactgctggtgataacatt
ttaccgaaattgtacccatttttaaaaagatatgtacagtctagtaatatgtcagacgtg
ttagaaatagcaacgggactagtagaagtagtcaggcaggaatctaatagaagtactcct
ttgagtcacgtgggcaaatctcccttatattttgttttattaaataagtttggcgtttca
gctttagtagtactactaatcagagctgaatgtctcctatcatcagactccgtaacggaa
aaacagcagaacacatggtccaacttcttggtgagttgggcacagatcacagagtcagtg
agtaagatcccctcgccgatcgataccatcccctctccaatatttgacaagcattgcaac
agatttaaaattttaaagccagacaagagatccttgttggaaaaatattttgttgattgt
aactctaatgtatag
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