Diabrotica virgifera virgifera (western corn rootworm): 114335747
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Entry
114335747 CDS
T09922
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv04512
ECM-receptor interaction
dvv04518
Integrin signaling
dvv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114335747
04518 Integrin signaling
114335747
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114335747
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dvv00535
]
114335747
Proteoglycans [BR:
dvv00535
]
Extracellular matrix (ECM) proteoglycans
Others
114335747
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
114335747
NCBI-ProteinID:
XP_050509277
UniProt:
A0ABM5KGE9
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All DBs
Position
6
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AA seq
1003 aa
AA seq
DB search
MYRKFFERWRHLLYLLVPLLLDLKYIGAQLDEDEDIRRPCADFKIGDDDLEAYDFIRRFR
LDLLNTPYPGVSRVRGTNRMQTAYRLDKEADLTVPTRRIFPLGLPDQFSFISTFRTKKPP
RGVWHIIRITDVEFRPQFLITLNPINQTIEFSITNYEGRLQTIQFDNATVFDRNWHKIHF
GVSRDSVMLYVDCRKISQEALEPRGAIDINGKVSLSKYENSTETVPIDLQWMVMSCDPTR
PVREHCTELPKPSVIPIPTPPKPYPKCNVVCPRGPPGYNGTDGLPGREGPIGEPGLAGRR
GLPGPRGVGGLPGRPGYPGSPGLQGMPGIRGPQGNTGSPGKPGKDGTSGVKGDKGDQGFP
GPKGDRGVDGSPGAPGIEGPRGLRGPPGETVTNNGKVIEGPQGPIGPRGPQGVPGLEGPV
GPRGPPGERGFTGRNGTDGRPGLRGYKGERGEHGIQGVQGFPGPPGPPGQPGSHSQTKNN
EPTIIQGPQGPIGPPGYPGVPGSVGRKGEQGERGEPGLKGTKGDTGLPGAHGLDGARGPE
GKHGLQGPEGLRGERGFIGPQGLPGPPGLIGVPGPSGVPGLAGTPGEKGNQGEPGPPGTG
GSAAGVGEKGAPGPPGEPGINGEDGEKGERGFPGLPGPPGLMGPPGVQGSEGLPGKHGEQ
GPPGQRGEQGPTGTTGPAGSPGKDGVNGLPGLIGDKGDKGEIGTQGPIGPRGYPGNPGAA
GFPGVSGPIGAPGLVGQTGPPGLPGPPGRPGEALVGNIIDTGKSPGIHGPRGFPGPPGIP
GERGAAGERGPAGPSGVPGLTGKEGPTGLPGPPGQSGQPGLPGIQGQPGRSFTEAEVRDI
CAAVLRDQLAELTATLVGPPGPPGESRPGRPGPPGVQGPPGDSGPPGLQGEMGFMGLPGP
SGPPGSIGLTGERGEKGDKGSEGVGVEGPIGPRGVQGPMGVPGVGVPGPMGERGEPGRQG
TPGLRGAPGAQGPPGYCEFCNNYNAAAQNYQAYMASRGNNKGP
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtatagaaaatttttcgagagatggcggcacttattatacttattagtacctctttta
ttggatctcaagtacataggagcacagttagatgaagatgaagatattaggcggccatgt
gcagattttaaaataggagacgatgacttggaggcatatgatttcatccgacgatttcgt
cttgatcttctgaacacaccatatcctggtgtatctagagttagaggaaccaatcgtatg
caaacagcgtacagacttgataaagaagcagacctaacggtaccaacaaggagaatattt
ccattgggactaccggatcagttttcatttatttcgacatttaggactaaaaaaccacca
agaggagtctggcacattattagaatcacagatgtggaattcagaccacaatttttaata
actctaaatccaattaaccaaacaattgaattttcaattacaaattatgaaggaagatta
cagactatccagtttgataatgcaactgtttttgacagaaactggcacaaaattcatttt
ggggtctcaagagattctgttatgctttatgtggactgtcgtaaaatatcacaagaagct
ttggagccacgaggtgctatcgatataaacgggaaggtatctctatcaaagtatgaaaat
agtacagaaacagttccaattgatcttcaatggatggtaatgagttgtgatcccaccaga
cctgtcagagaacattgtacggaactccctaagccttcagttattccaataccaacgcca
ccaaaaccatatccaaagtgtaacgtggtttgtccaagaggaccaccagggtataatgga
acggacggcctaccaggtcgagaaggccccataggagaaccaggattagcaggacgaaga
ggtctaccaggtcctagaggtgtaggtggcctaccgggcaggccaggttacccaggatct
cctggtttacaaggtatgcctggtataagaggacctcaaggaaacactggcagtcctgga
aaaccaggaaaagatggaacatctggagtcaaaggagacaaaggggatcaaggttttcct
ggaccgaaaggtgatcgtggtgtagacggtagtccaggtgctccaggaatagaaggtcct
cgaggacttaggggtcctcccggggaaacagttacaaacaatggcaaggttattgaagga
ccacagggacctattggacctagaggacctcagggtgtaccaggacttgaaggaccagtc
ggtccaagaggtcctcctggagaaaggggatttacaggacgtaatggaacagatggacga
cctggactgaggggttataaaggagaaagaggagagcatgggatacaaggggtacaagga
tttccaggacctccgggacctccaggacaacctggcagccattctcagacaaaaaataat
gaacctactattattcaaggacctcaaggccctataggaccgcctggatatcctggagtt
ccaggatctgtagggcgtaaaggagaacaaggagaaaggggcgaacccggacttaaaggt
accaaaggtgatactggattacctggggctcatgggttagatggtgcacgaggtccagaa
ggaaaacatggactacaagggcctgaaggtcttagaggagaacggggtttcataggacct
caaggattaccaggaccaccaggccttataggtgtgccgggtccttcaggcgtgcctggt
ctagcaggtacaccaggagaaaaaggtaaccaaggagaaccaggtcctcctggaactgga
ggatcggctgccggtgttggtgagaagggagcaccaggaccgcctggtgaacccgggatc
aatggagaagatggagaaaagggagaaagaggttttccaggacttcctggtccaccaggt
ctaatgggacctccaggcgtacaaggatcagaaggtttaccaggaaaacatggagagcag
gggccaccaggtcaaagaggtgaacaaggtcctacaggaacaacaggacctgctggttct
ccaggtaaagacggcgttaacggattaccagggttaataggagacaaaggggacaaagga
gaaattggaacacaaggacccattggtccaagaggatatccaggcaatcctggagcagca
ggatttccaggagtatctggacctataggcgcaccaggtttagttggacagacaggtccg
ccaggattaccaggaccgccagggcgaccaggagaggcactagttggaaatattattgac
actggtaaatcaccaggaattcacggtcctagaggttttcctggacctccaggaattcct
ggcgaaagaggtgcagctggggaaagaggaccagcaggtccgtcgggcgttcctggactg
acggggaaagaaggtcccactggtttgccaggacctcccggccaaagcggtcagccaggt
ttgccaggaattcagggacaaccgggaagaagttttacggaagctgaagtaagagatata
tgtgcagcggttttaagagatcaacttgccgagttgaccgctacattagtaggtcctccg
ggtccaccaggtgaatccagacccggtagaccaggcccaccaggtgttcaagggccacca
ggtgattctggtcctcctggactacaaggggagatgggtttcatgggacttccaggtcct
tcaggaccgcctggttcaattggtctcacaggagaacgaggcgagaagggagataaagga
tctgaaggagtgggagtagaaggaccgattggaccaaggggtgtgcaaggtccaatggga
gttcctggagttggggttccaggaccaatgggagagagaggagaacctggaagacaaggt
actccaggactaagaggagctcctggcgcacaaggtcctccaggctattgcgagttctgc
aataactataacgctgctgctcaaaactatcaagcctatatggctagtaggggcaacaac
aaaggcccgtaa
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