Diabrotica virgifera virgifera (western corn rootworm): 114339120
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Entry
114339120 CDS
T09922
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114339120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvv03019
]
114339120
Enzymes [BR:
dvv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114339120
Messenger RNA biogenesis [BR:
dvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114339120
mRNA degradation factors
3'-5' decay
Ski complex
114339120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
ATPase_2
Glycos_trans_3N
Imm30
Motif
Other DBs
NCBI-GeneID:
114339120
NCBI-ProteinID:
XP_028145551
UniProt:
A0A6P7G8P6
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All DBs
Position
4:complement(160085849..160213724)
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AA seq
1197 aa
AA seq
DB search
MEAPPILASVESELKKYILSPENLPIHQYEKNQKFWSREPIPKELLWFEESPSITTLQVQ
RDPNSGQIMDFKEVSLQSAGATAKNSMSLNRAPAPPSEATRGSASFKPFWPGSFPAPESY
ENEQTLCESEPLLTVPPGFDRGLTFGKDNRTLRTEDETLDEIQEIKNDSPNVVNLLKTVL
KEEELLGAFESEYAVESNSKTVEELLPEEEEILSKETPVLIISKTVPKNLYTHGSEWAIL
LDTSKPVTDFKERIPEMAIEYPFELDTFQKLAILQLEQHNHVFVAAHTSAGKTVVAEYAI
ALSQKHMTKSIYTSPIKALSNQKYRDFKEKFNDVGLITGDFQINQKASCLIMTTEILRSM
LYCGSDITRDLEYVIFDEVHYINDRERGHVWEQVLIMLPAQVCVVLLSATVPNTIEFADW
LGRTHQRKVYVVSTHQRPVPLKHFLYTGKGGSTRDNRFMILNADKWMLNGFIKAKESMKV
DPHKNFNQRLSPAQEKTLWSGLISHLKKNDLLPVVAFTFSRQKCDNNATNLTSLDLTTQK
EKAHITLSFNRWIRCLKEPDQNIPQIIKMRDILARGIGVHHSGILPIIKEIVELLFQEGY
IKLLFATETFAMGVNMPARTVVFDSVRKHDGKELRDLEAAEYTQMAGRAGRRGLDAEGTV
IILCKQTIPLEENFKKMMLGKPSSLVSQFRLTYGMVLSLLRVESISVEGMMSRSFREADH
QKNMVEIRKKLEKVDEELKELCRQQISTYLQPLVKFYETASAYLNIRKNIMNSVLSFPKV
QKTLSPGRLIVITHKHHVNKLALILSCIRSKQLLYKVLVLNDSAQEVSKDHKEDFWYYML
SLTEEKLFSTATAAEHDILTVSAEDIFEISGRTLKVNTDLVIKDVEKRQMERFKYDPVGQ
TCVEAVQELHKLTMLANNDTGTLEFLHFIIDLKVNDQELYIGLQKMYEIKDKLIDHLLST
RIPNFERQFCIVFSRKFLEEKKKDLEFQLSNASLSLYPDYENRIELLRRLNYVDGQNKIQ
LKGYVACEIGMNELLLTELILRNILSKLKPAEVAALLSALVFRGRSQDEAFDDDGLTPDL
RKAIKEIQEVHREIGTKELSLGIQTDEFQEELNFGLVHFVYEWATNKPFAEIMKMTDIQE
GIIVRCIQQLNETIMDVRDAARIVGDPELKNKMEEASTSIKRDIVFTASLYTLTEPL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggaagctcctccgatattagcttctgtagaaagtgaattaaagaagtacattttatcc
ccagaaaacttaccaatccatcagtatgaaaaaaatcagaaattttggtctcgtgagcca
atacccaaagaattactatggtttgaagagtctccttcaattaccacactccaagttcaa
agagatccaaacagtggccaaatcatggattttaaagaagtctccctccaatcagcaggg
gctacagcaaaaaattcgatgtcattaaatagagctccagcccctccatctgaagcaact
aggggcagtgcttcattcaagccattttggccgggtagttttccagctccagagtcctat
gagaacgaacaaactctttgtgaatctgaaccattacttactgtaccacctggatttgac
agagggcttacattcggtaaagataataggaccttacgtactgaagatgaaacgttagat
gaaattcaagaaatcaaaaatgattcaccaaatgtagttaatttacttaaaactgttcta
aaagaagaagaactattgggagcatttgaatctgaatacgccgttgaatcaaattctaag
acagttgaggaattattaccagaagaagaagaaattctgtctaaagagaccccagtatta
attataagtaaaactgttccaaaaaacttatatacacatggtagtgaatgggcaatttta
cttgatacatccaaacctgtaactgattttaaggaaaggataccagaaatggctattgaa
tatcctttcgagttggacacatttcagaagctagcaattttgcagctggaacagcataat
catgtatttgtagcagctcacacttccgcgggaaaaacagttgtagcagaatatgctata
gctctttctcaaaagcacatgacgaagtcaatctacacttcacccattaaagcactttct
aatcagaaatacagagactttaaggaaaagtttaatgatgttggacttattactggagat
tttcaaattaaccaaaaagcatcttgtcttattatgacaactgaaattttacgatctatg
ctctactgtggaagtgatattactagggacttggaatatgttatttttgatgaggtgcat
tacataaacgacagagaacgaggacacgtatgggaacaagttcttataatgcttccggca
caagtatgtgtggtcttgcttagcgccacagtaccgaatacaatcgaatttgcggattgg
ttaggcagaacccatcaaagaaaagtttatgtagtgtcgacacatcaaagaccagtgccc
ttaaagcactttctttatacgggtaaaggtggaagtacacgtgacaataggtttatgatt
ttaaacgctgataagtggatgttaaacggatttatcaaagctaaagaatccatgaaagtg
gatcctcataaaaattttaatcaaagattgagccctgcccaagaaaaaaccttatggtcg
ggattaatttcccatcttaaaaagaacgatcttcttccagtagtggcctttactttttcg
cgacaaaaatgtgacaataatgctacgaatttaacaagtttggatcttacgacacagaaa
gagaaagcacacataaccttatcatttaatagatggatcagatgcttaaaagaacccgat
caaaatattcctcaaattataaagatgagagatattctagcaagaggcatcggtgttcat
catagcggtattttaccaatcatcaaagaaatagttgaattgttgttccaagaggggtac
attaagctactttttgcaacggaaacttttgccatgggtgtgaatatgccagcaagaaca
gtggtttttgattcagttcgtaaacatgacggcaaagaattacgtgaccttgaggctgcc
gaatacactcagatggctggacgtgctggaagacgtggtttggatgcggaagggactgtt
attattctgtgtaaacaaaccattcctctggaagaaaattttaagaagatgatgctgggc
aaacctagttcgttagtgagtcagttcagattaacgtatggaatggttttaagtttgcta
cgtgtagaaagtataagcgtagaaggtatgatgtcaagaagttttagagaagcagatcat
cagaagaatatggttgaaataaggaagaaactagaaaaagtcgatgaagaattaaaagaa
ttgtgtagacaacaaattagtacttacttgcagcctttagttaaattttacgaaaccgct
agcgcttacttgaatatcagaaagaatattatgaattccgtgctgtcttttcctaaagta
caaaaaacattaagcccaggcagattaattgtaataacccataaacatcacgtaaacaag
ttagctctcatattaagctgtataagatccaagcagcttctatacaaggttctagttttg
aacgatagcgcccaagaggtatcaaaagatcataaagaggatttctggtattatatgctg
agtcttaccgaagaaaaattgtttagtactgctactgctgctgagcatgatattttaacg
gtatctgctgaagatatattcgaaatatcaggaagaactctaaaagtaaacactgatttg
gttataaaagatgttgagaaacgacaaatggaacgatttaaatatgatccggtaggtcaa
acctgtgttgaagctgttcaggaattacataaattaactatgttggccaacaacgatacg
ggcaccttggagttcttacattttattatagatttaaaggtaaacgaccaagaactctat
attggtctacaaaaaatgtatgaaataaaagacaagttaatcgatcatttacttagtact
agaattcctaatttcgagcgacagttctgcatagttttctctagaaaatttctagaggag
aagaagaaagatttagaattccaattgtcgaatgcaagtttatctctttatcctgattat
gaaaacaggatcgaattgttgcgcaggttaaattatgtagatggacaaaataaaattcag
cttaagggctatgtagcttgtgaaataggcatgaacgagctattactaaccgaactgatc
ctacgaaatattttaagcaagctcaaacctgccgaagtagcagctctgttatcagctttg
gtgttcagaggtcgatcacaagacgaagcttttgatgatgatggactaactccggacttg
agaaaagctattaaagaaattcaagaggtgcatagagaaataggtacaaaagagttaagt
ttgggcattcagactgatgagtttcaagaagaattgaattttggactagttcattttgtt
tatgaatgggctactaataaaccatttgcagaaattatgaaaatgacagatattcaggaa
ggtattatcgtgcgatgtattcaacaactaaatgaaactattatggacgtcagagatgct
gcgagaattgtaggtgatcctgaactcaaaaacaaaatggaagaggcgtctacatccata
aagagagatattgtatttactgccagtttgtatacattaacggaacctctttaa
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