Diabrotica virgifera virgifera (western corn rootworm): 114344934
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Entry
114344934 CDS
T09922
Name
(RefSeq) endoribonuclease Dcr-1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dvv03036
]
114344934
Chromosome and associated proteins [BR:
dvv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114344934
microRNA pathway
RISC loading complex
114344934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114344934
NCBI-ProteinID:
XP_050507473
LinkDB
All DBs
Position
5:complement(110795809..110874329)
Genome browser
AA seq
1840 aa
AA seq
DB search
MASYHNENVYTHTFTPKEYQVELLESAKIKNTIMCSSTSCAKAFILVKLLQEFSWQMRIK
NGKKALFILDPQNVPIMTSHIKYLTDLNCISIMEYTLDAKENGILDYFEPYQVITSTAEI
CVEMLKQSIISDFSAFNLFVIDDCLYGPRQSLIEIIMKYYRSSPVFNRPRILGLTTGLLS
SELQPDRLEGELRRLEKLLNSDVDTSSEIVTLIRLCCRPHETLIECPKNEPDSLYDEIKN
IIKMAIEFLKDHRYDPSEIYEDDLLEELKQVPDPRTVPLELLEEFLEILKDLGPWGADKA
ALNILSKIEKLKVKIPYERHYLLLCMVSSALVTVRAVCDYVFESYDELERINKFSSPKVL
KFIDVLKQFKPPGEKPQPSQLIKDKEETSPVKIKCRGKGPRRPLFPRPQNEDNLCCLVFV
HNRYKAKSLFALLCSLSNVHDDLWWISALFSVEKVADSRSEARQAENEHKTQEEVLRKFR
CHECNILVSTSVLEQGCDLPKCNLVIRFDLPNTFYSYIQSKARARAPEAHYILFGNEQEL
DKFVDNLAEYNEVENTLLRRCYSLEPNKNEEMVADMYNNLCKPYQPLSEEGAPSITLINA
ISLLNKYCAKLPSDTFTRLTPIWSEDKTNDGKFICHLRLPINSPVKKTISSPPMPNGLLA
RRAAAFMICQLLHMTKELDDYLQPISKENFRATEDDWVNFALDESDDETSEVRPGTTKRR
QYYYKRISEALLNCHPVAGQPTFFYKIMMTLTCPLPEEQNTRGRKIYPPEDSLQGFGILT
SKRIPKISAFPIFTRSGEVSVDLELISTDVVLSESQIEKTREFVNYTFTSVLRLQKYLML
FNPEASPNNYLIVPTIKDDAQSVRVHWDFIDLIFNNLTTTPEFIVDEKRVDYEFKAEAYS
DAVVMPWYRNQDQPQYFYVAEICSNLNPTSAFPGSEYATFEEYYNRKYGIQIQNLNQNLL
DVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCAIHPFPGSLW
RKAVALPCILYRINALLLADQIRRTVAEALRLGKSNLSEDFKWPSLNFGWSLSDVLKKSR
EEELRKKQENLAALETKVTEKLQTLTIREIKSDEDPESIDDCSNDDTKLETYISDSNNEG
ESKWIEIGTWCNEMAGSTDPENSAVVRYASPTSWMAVDTNYEDFSDSESDMYDEDSDTEL
GPFRIEFTGDHQAEAVDDEEDEEDSSFKLYNDDSVWQIDEENELTENLKKEFHAACDKNK
KHILSSGILIKRDSTFSKHSSRDKEGVTVFLNPIVNNIDLSGLYMTPIEQQMDDILELEY
FNEYDKSEPLSFSFDKQPNLEEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYA
ITNYLYSKYENVHEGKLSHLRSKQVSNLNLYRLGRRKYLGEFMIATKFDPHDNWLPPCFY
VPKQLEEALIDAQYPANCWSVADMAATRNMSLDDICLMVRERAEGYTLTSNLLSDGPMAI
PYNLVTQHSIPDKSIADCVEAVIGAYLIECGPRGALLFMAWLGIRVLPRLPDDGYGEIKP
PRSPLLRHVHDPEGELTRLLDGYDKFERHIGYKFADRSYLLQATTHASYFPNHLTDCYQR
LEFLGDAVLDYLITRHLYEDPRMHSPGALTDLRSALVNNTIFASLAVRNNFHKYFRHLSP
GLNEVVERFIRLQEESGHSLVEELYLVVETECEEIEDVEVPKALGDVFESVAGAIFLDSG
MSLDAVWKVYYKMMKPEIEQFSNKVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVE
VFGKGLFKGIGRNYRIAKCTAAKCALKHLKRRGLLRKVEN
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggcaagttatcataatgaaaatgtatacacacatacattcactcctaaagaatatcaa
gttgaattattggaatctgcgaaaatcaaaaacaccataatgtgctccagcacaagttgc
gccaaagcttttattcttgttaagttattacaagaattttcctggcaaatgcgaattaag
aatggtaaaaaagctctgtttatcttagatccacagaatgttccgattatgacctcgcat
ataaagtatctaacagatttaaattgtattagcatcatggaatatactcttgatgccaag
gaaaatggaattctggactattttgaaccttatcaagtgattacctctactgcagaaata
tgtgtggaaatgctcaagcaaagtattatttcagatttttcagcattcaatttatttgtt
attgatgattgtttatatggtccaagacagtcacttatagagataattatgaaatattac
agaagctcaccagtttttaatcgacctagaatacttggtttaacaacaggtctattaagt
tcagaattacagccagatagactagaaggggaactaagaagactagaaaaattactaaat
tctgatgtggacacttcatcggaaatagtaacattgattagattatgttgtagaccacat
gaaactttaatagaatgtcctaaaaatgaacctgacagtttgtatgatgaaataaaaaat
attattaagatggcaatagaatttcttaaagatcacaggtatgatccaagtgaaatatat
gaagatgatttattggaagaattaaaacaagttccagatcctcgaactgttcctttagag
ttactagaggagtttttagaaattctcaaagacctaggaccatggggtgcagataaagct
gctcttaacattttgtcaaaaattgagaaacttaaagtaaaaataccatatgaaaggcat
tatttattactctgtatggtatcatcagctttagtaactgtgagagcagtatgtgattat
gtgtttgaaagctatgatgagcttgaaagaataaacaagttttcttctccaaaagttctc
aagtttattgatgttttaaaacaatttaagcctcctggagaaaagccacaaccttctcaa
ttaataaaagacaaagaggaaacttcaccagttaaaataaaatgtagggggaagggacca
agaaggcctttatttcccagacctcaaaatgaagataacttatgctgcttggtctttgtt
cacaatcgctataaagccaaatcactatttgccttgctctgttctctgtcaaatgtacat
gatgacttatggtggatatcagcattgttttcagttgaaaaagtagcagatagtagaagt
gaagcaagacaggctgaaaatgagcacaaaacccaggaagaagtactgcgaaagttcagg
tgccatgaatgtaatattctcgtttccacatctgtactagaacaaggctgtgatttacca
aagtgcaacttagttattagatttgatttgccaaacacattttatagttacattcaaagt
aaagcaagagctagagctcctgaggctcattatattctttttgggaatgaacaggagctt
gataaatttgtagacaatttagctgaatataatgaagtagaaaatacattacttagaaga
tgttatagtctagagcccaataaaaatgaagaaatggttgctgatatgtacaataatcta
tgcaaaccataccaacccttatcagaggaaggtgcacccagtattactttaatcaatgcg
atctctttacttaataaatattgtgccaagctacctagtgacacttttaccagactaact
cctatatggtcagaggacaaaactaatgatggtaaatttatttgtcatcttcgacttcca
attaactctccagttaagaaaaccatcagcagtccaccaatgccgaatggtttattggcg
aggagggctgcagcgtttatgatctgccagcttctacacatgaccaaagaattagatgat
taccttcaaccaattagcaaggaaaattttcgggctacagaagatgattgggtgaatttt
gctctggatgaatctgatgatgaaacctctgaagttcggccaggtaccaccaaacgtaga
caatattattataaacggatatcagaagccctcttaaattgccatccagttgctgggcaa
ccaacgttcttttataaaataatgatgacattaacatgccctttacctgaggaacaaaat
acaagaggcaggaagatttatcccccagaagactcccttcaaggttttggaattctaact
tctaaaaggataccaaagataagtgccttcccaatatttactcgatcaggagaagttagt
gtagatttggagcttatatctacagatgtcgttcttagtgagagccagatcgagaaaacg
agagaatttgtaaactatacctttactagcgttttgaggctccagaaatatttaatgtta
ttcaatccggaagcttcacctaataactatcttattgttccaactattaaagatgatgct
caaagtgttagagtccactgggatttcatagatttgatattcaataatttaacaactact
ccggagtttattgtcgacgaaaaaagagtagactacgaatttaaagctgaggcatatagt
gatgctgtcgtgatgccctggtataggaatcaagatcagcctcagtatttttatgttgct
gaaatttgtagcaacctgaaccctacgtcagcatttcctggctcagagtacgctacattt
gaggagtattataaccgaaaatatggtatacagattcaaaatttgaaccagaatctacta
gatgtcgatcatacttcagccagattaaattttcttacccctagatatgtgaacagaaaa
ggagttgctctgccaacaagcagtgaagaaaccaaacgcgccaagcgcgaaaacttggaa
caaaagcaaatactagtgcccgaactatgtgccattcatccatttccaggttctctatgg
agaaaagctgtagcgttaccttgcattctttacagaatcaacgcgttgctcctggccgat
cagatacgcagaacagttgctgaggctctcagattaggaaaatcgaatttgtctgaagat
tttaaatggccttccttaaatttcggttggagcctctccgatgtcctcaagaaatccagg
gaggaagagctacggaaaaaacaagagaacttagcagctttggaaacaaaagtaacagaa
aaattgcaaacattaacgattcgggaaataaaatcggatgaagaccctgagagtatagat
gattgcagtaatgatgacaccaaattagaaacttatataagtgactctaataatgaaggc
gaatctaaatggatcgaaataggtacatggtgtaatgaaatggccggatctacagaccca
gaaaattcggccgtagttcgatacgcttcaccaacaagttggatggcagtagatacaaac
tacgaagatttttctgatagtgaatcagatatgtatgatgaagattcggatacagaactt
ggaccttttagaatcgagtttacaggtgatcatcaggcagaagctgtagacgatgaagaa
gatgaagaagatagttccttcaaactttacaacgatgacagtgtgtggcaaatagatgaa
gaaaacgagctgactgagaatcttaagaaagaatttcatgcagcctgtgacaaaaataaa
aaacatatactttcaagtggcatattaattaaaagggacagtacttttagtaaacactct
tctagggataaggaaggagttacagtgtttttaaatcccatagttaataatattgattta
tcaggactatatatgacccccatcgagcaacaaatggatgatatattagaattagaatat
tttaacgagtatgataaatctgaacctctgtcatttagttttgataaacaaccaaaccta
gaggaacatcctggtccaagtcctaacgtgttattacaagctttgacaatgtcaaatgcc
aacgatggtattaatttagagaggttagaaacaattggtgattcttttttaaaatatgct
ataacaaattacttatattctaaatacgagaacgttcatgaaggaaagttgagtcatttg
aggtctaaacaagttagcaatttgaatttatatcgtttaggaaggcgaaaatatttagga
gagtttatgatagctacaaaatttgatcctcacgataattggttgccaccgtgcttttat
gttccgaaacaactggaggaggcgttaatagacgcacaatacccggcgaactgctggtca
gttgcagacatggctgctactagaaacatgagtttagacgatatttgtttaatggtacga
gagcgtgcggagggttatacattaacaagtaatttgttgagtgatggtcctatggcaatt
ccatataatctagttacacagcatagtatccctgataaaagcattgcagattgtgtagaa
gcagttataggcgcttatttaatagagtgtggaccgcggggagcacttctatttatggct
tggttgggaataagggtattgccaaggctaccagatgatggttatggagaaattaaacca
cctagatcaccacttttacgacatgtgcacgatcctgagggagaattaaccagactgtta
gatggatacgataaatttgaaagacacattggttacaagtttgcagaccgttcatattta
ttgcaagccacgacccatgcgtcgtatttccctaaccaccttacagattgttaccagagg
ctagaattcctgggcgacgctgtactcgattatttaataacaagacatctatacgaggat
cctaggatgcattctcctggtgctttgacggatttgagatcagctctagttaataataca
atttttgcatctttagctgtgagaaataactttcataaatattttagacatctgtcacca
ggcttgaacgaagttgtggagagatttataagactacaagaagagagtggacattcttta
gtagaagaattgtacctggttgtagagaccgaatgtgaggaaatagaagatgtagaagtt
cccaaagccttaggagatgtctttgaatccgtagcaggtgcaatatttttagattctgga
atgtcattagatgctgtgtggaaagtgtactataaaatgatgaaaccggagatcgaacag
tttagcaataaagtacccaaatcacccattagagaactcttggaactcgaaccagaaaca
gcaaaattcggcaaaccagaaaaattggctgatggaaggagagttagagttactgtggaa
gtatttgggaaaggtttgtttaaagggattggacgcaattaccgtattgccaagtgtacc
gcagctaaatgtgcattaaaacatctgaaaagaaggggtttgttaaggaaagtagaaaac
taa
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