Diabrotica virgifera virgifera (western corn rootworm): 114348903
Help
Entry
114348903 CDS
T09922
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv04512
ECM-receptor interaction
dvv04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114348903
04518 Integrin signaling
114348903
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dvv00536
]
114348903
Glycosaminoglycan binding proteins [BR:
dvv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114348903
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
114348903
NCBI-ProteinID:
XP_028155165
UniProt:
A0A6P7HHP6
LinkDB
All DBs
Position
7:complement(226660358..226691611)
Genome browser
AA seq
1540 aa
AA seq
DB search
MKLNLYLWAVLLALTLVSTKIEAGTRRKHSSKSKTKAQSDDPNSIQPEEVQNQDPSEFEE
YGKLDDYEDYYDENETRRPAAASVSYPSTPAPITTPQPENERPRNRHPERTTEIFVQPEN
ERPTQRPTGSVNVHVIPPTERTYTCTQDNREYQDKEKWKVGECTECACVRGRTECTTDEA
CLQTLNSPQSGPQGEHGETGEPGRPGDPGMPGNPGTPGIPGAPGPPGPLPDLSAFYQQLS
QSQGGDKGPNYPEPFQYLQAQVGPVGSRGPPGPPGPVGPQGFQGLRGEIGEPGPAGPPGP
AGPRGLTGSPGKDGERGDDGEAGAAGATGPPGSRGIPGMPGLPGVKGHRGFPGLDGSKGD
QGSTGEKGSQGVSGPMGQTGSQGPAGPRGERGREGPPGPPGIRGIDGIAGPPGMPGSIGK
PGAPGFPGNPGAKGDQGASGPKGSQGYQGSRGESGRPGSPGESGPPGPAGKDGLHGEKGN
TGAPGIVGPPGFPGARGPPGLAGSSGQPGAKGADGLPGERGYRGEPGIKGEIGSAGPRGL
PGVSGPEGKRGKRGMRGSPGPQGLTGERGIAGVRGLPGPDGAPGPKGQAGARGGTGPAGP
KGPEGEAGRQGSPGLQGIRGVPGRTGAPGKPGPSGERGIPGQDGKPGEAGPQGIQGLPGP
LGMPGERGLTGEPGKDGEAGPLGPAGPRGDAGKDGNPGPQGLPGPPGVDGERGAPGVDGA
RGFQGLPGAVGNPGSPGKDGEQGVQGPIGVSGPQGQRGERGFPGERGLPGISGLPGSKGA
TGAQGADGPLGPDGPPGPKGHPGLPGAIGLPGLRGAPGSQGEKGEHGSVGPIGPDGAPGR
QGERGPMGPLGPPGSPGEPAAPGEPGPQGISGEPGAPGASGERGPSGPQGVQGFPGPPGL
IGLPGIKGERGFNGMKGAQGNSGLPGKPGEPGPQGPIGLTGAKGARGEAGQRGDAGIMGA
PGRPGEQGPAGLPGNAGPSGPQGIPGIKGATGDIGRSGLPGPQGLPGAQGPEGGRGERGN
EGAPGPVGPIGPQGPSGERGIPGFPGPPGPIGSQGTRGSPGEVGPAGKPGNEGPPGPQGM
PGPLGPPGSSGDQGPEGPSGKPGLPGISGRPGDKGPQGLPGPPGNVGTPGLPGPQGPAGQ
AGLAGERGPRGEQGPAGQDGAPGERGKQGAPGQQGSKGDRGEMGLIGPKGHAGLMGLQGL
PGAQGAPGERGLPGERGLPGKDGESGSRGPPGREGSSGPQGPMGSPGSRGESGKDGRPGP
PGAPGPAGPPGPPGEGMGYDAASLAALLAQGQNNQKGPDSMNDQPPRIFGKELTAEETRE
LIDKAYEQLKSSFEKLRKPNGQKNSPGKTCRDIKAAYPDSQNGQYWVDPNEGDIKDSILV
YCNMEQRATCILPSPVRTPEVNYKGREPEIWLGDVNHGMKITYKADSTQIAFLHLLSSKA
SQNLTYHCKKSAAYFDATRHTFRRGIKLLTWNDIEVTPKGKLKYEVLSDECRYRRNTWEQ
SVITYSTEKPQRLPIVDIAIRDVGEQDQFFWVEIGEVCFS
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaatctatatctttgggctgtactattagcccttactcttgtaagtaccaaa
atcgaagctggaacaagaagaaaacattcatctaaatctaaaacaaaggctcaatccgat
gatccgaatagcatacaaccagaagaggttcaaaatcaagatcctagtgaatttgaagag
tatggcaaattagatgactatgaggattattacgatgaaaatgaaactagaaggcccgct
gctgcatcagtttcgtatccctctacaccagctcctatcacaactccacaaccagaaaac
gaacgtcctcgcaatcgtcaccccgaaagaacaacggaaatttttgttcagcccgagaat
gaacgaccgacgcaaagacctacaggaagcgtcaatgttcatgttattccgcccacagag
agaacatacacgtgcacacaagacaacagagaatatcaagataaagaaaaatggaaagta
ggagaatgtacagaatgtgcatgtgttagaggcagaacagagtgtaccactgatgaggca
tgtttgcaaacactgaactctcctcaatcaggacctcaaggagaacatggtgaaactggt
gaacccggaaggccaggagatccaggtatgccaggcaatccaggtactcccggtattcca
ggtgcacccggaccgcctggacctctaccagatttaagtgccttctaccaacaattatca
caatctcaaggtggtgacaaaggacctaactatcctgaaccgtttcaatatctgcaagcg
caagttggacctgtcggatctagaggaccaccaggtccaccaggcccagtaggaccacaa
ggtttccaaggtcttcggggagaaataggcgaaccaggaccagccggaccaccaggtcct
gctggacccagaggacttacgggctcacccggcaaagatggagaacgaggagatgatggt
gaagctggagcagcgggagcaacaggtccacctggttcacgaggtattccgggtatgccc
ggattgcccggggtaaaagggcatagaggatttcctggtctagacggttctaaaggtgat
caaggttctactggtgaaaaaggatcacagggagtgtcaggaccaatgggacagactgga
tctcaaggaccagctggcccaagaggagaaagaggacgcgaaggtcctccgggccctcct
ggaataagagggattgatggaattgctggaccaccgggaatgccaggttctattggtaaa
cctggagcaccaggatttccaggaaatccaggtgcaaaaggagatcaaggagcatcaggt
ccaaaaggtagtcaaggataccaaggaagtagaggcgaatcaggaagaccgggttcaccg
ggagaatctggtcctcccggtcccgctggaaaagatggattacatggagaaaaaggtaac
acaggagctccaggtatagtaggaccacctggatttcccggagccagaggacctccagga
ctagcaggaagttctggtcaaccaggagctaaaggggctgatggtttgcccggggaaaga
ggatatagaggagaacccggtataaaaggggaaataggttctgcaggacctaggggatta
cccggtgtatctggcccagagggaaagcgtggaaaaagaggcatgagaggatctccagga
cctcaaggacttactggagaacgtggtattgctggagtaagaggtcttcccggccctgac
ggagcaccggggcctaaaggtcaagctggtgcaaggggtggaactggtccggcagggcca
aaaggacccgaaggagaagctggtaggcagggttctccaggtttacaaggaataagaggt
gtgcctggaagaactggcgcacctggaaaaccaggtccatcaggggaaagaggcatacct
ggacaggatggaaagccaggagaagctgggcctcaaggaattcaaggtctgcctggtcct
ttaggtatgcctggtgaaagaggactgactggtgaaccaggaaaggatggagaagccggc
ccactcggaccagcaggtcccagaggtgatgcaggtaaagatggaaatccagggccacaa
ggtcttccgggtcctccaggtgtagacggcgaaagaggagctcctggtgttgatggagca
agaggttttcaaggtcttcctggagctgttggtaatccaggttcacccggtaaggatggg
gaacaaggagtgcaaggccccattggtgtttccggaccacaaggacaaagaggggaacga
ggtttcccaggagaaagaggacttcctggtatatcaggtctacccggatctaagggtgct
actggggctcaaggagctgatggaccactaggcccagatggaccacctggaccaaaagga
caccctggtttaccaggcgcaataggattaccgggattaagaggagcaccgggttcacaa
ggagaaaaaggagaacatggatctgtaggacctattgggcctgatggagcaccaggaaga
caaggtgaacgtggacccatgggtccactaggtcctcccggttcccctggagaacctgct
gcaccaggtgaacctggaccacaaggaatatctggtgaaccaggggcacccggggcatct
ggagaaaggggaccatcaggaccccaaggagttcaaggatttcctggaccaccaggactg
ataggattacctggaattaaaggagaacgaggatttaacggcatgaaaggggctcaaggt
aattctggattaccaggcaaacctggagagcccggtcctcaaggtccaattggattaaca
ggagccaaaggggctcgaggggaagctggacaaagaggagatgctggtatcatgggagct
cctggtagaccaggagaacaaggaccagcaggacttcctggaaacgctggaccatcagga
cctcaaggaatacctggtataaaaggagcaactggtgatattggacgctctggtttacct
ggtccgcaaggtctgccaggtgctcaaggaccagaaggaggaagaggtgaaaggggaaat
gaaggagctccaggacctgttggaccgattggtccacaaggaccatctggagaaagaggt
attcccggtttccctgggccaccaggacccataggaagccaaggaactagaggatcacca
ggagaggtaggacctgcaggaaaaccaggaaatgagggtccacctggcccacagggtatg
cccggacctcttggaccaccaggatcaagtggagatcaaggaccagaaggaccctccggt
aaaccaggtttaccaggaatatcaggaaggccaggtgataaagggcctcagggattacct
ggcccaccaggcaacgtaggaactccaggattaccaggtcctcaaggtcctgcaggacaa
gcaggtttagcaggtgaaaggggaccccgaggtgaacagggaccagctggacaagatggt
gctccaggagaaagaggaaaacagggcgcacctggtcaacaaggatcaaaaggtgatcgc
ggagaaatgggtttaataggccccaaaggtcatgctggcctaatgggtctgcaaggatta
cctggagcacaaggtgcacccggtgaacgaggacttcccggagaaaggggtctaccaggt
aaggatggagagagtggatctagaggtccaccaggcagggaaggtagttctggaccacaa
ggtccaatgggttccccaggttcaagaggtgaaagtggaaaggatggaagacctggaccc
cctggagcaccaggacccgctggacccccaggtcctccaggcgaaggaatgggttacgac
gctgcaagcttagctgctttgttggctcaaggtcaaaataaccaaaaaggacctgattcg
atgaatgatcaacctcctagaatatttggcaaagagctgactgcagaagaaactcgcgaa
ctcatcgacaaagcttacgaacaacttaaatcgtcttttgaaaaattaagaaagcccaat
ggacagaaaaactcaccaggaaaaacctgtcgagatatcaaagctgcgtatccagactct
caaaatggacaatactgggttgatcccaatgaaggggacataaaagattctattctagta
tactgtaacatggaacaaagggcaacctgtatactgccttctccagttagaacaccagaa
gtaaactataagggcagagaaccagaaatttggcttggagatgtaaatcacggaatgaag
ataacctacaaagcagacagtactcaaatagcctttttgcatttgctgtcttctaaagcc
agtcaaaacctcacataccattgcaagaaatcagcagcatattttgatgctaccagacat
actttccgacgaggaatcaaactgctcacctggaatgatatcgaagttactccaaaggga
aaactaaagtatgaagtactcagtgacgaatgcaggtaccgccgaaacacatgggaacaa
tcggttataacatactcaactgaaaagcctcaaagactacccatcgtcgatatagccatt
cgtgatgttggagaacaagaccaatttttctgggtagaaattggagaagtttgtttctca
taa
DBGET
integrated database retrieval system
