Diabrotica virgifera virgifera (western corn rootworm): 114349419
Help
Entry
114349419 CDS
T09922
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114349419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvv03019
]
114349419
Messenger RNA biogenesis [BR:
dvv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
114349419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
OB_RNB
OB_HELZ2
NleF_casp_inhib
Motif
Other DBs
NCBI-GeneID:
114349419
NCBI-ProteinID:
XP_028155593
UniProt:
A0A6P7HDA2
LinkDB
All DBs
Position
1:complement(100604412..100643643)
Genome browser
AA seq
961 aa
AA seq
DB search
MFTTKAFIKKTKIGHFLKNVREHYIRDDIFCGISTCEKCHPVDSNLSTTHQNKCGLFDFN
HFLILDTNIILDQMDILDEPILGNVIILHTVLKEVKHRSLPTYKRLHSIIENPSRHFYVF
TNDHHKDTYIKQKDGELINDYNDRCIRKSCSWYIQHLPKEKFVFLSDDANNRNIALEEGI
PACTIKDYITNVPDNSILQDKLSKKEIAIDSYTKDVFPPHLSNVALLTGVKEGKLYQGTF
RASRDNFLEGFVNVDAFKDSVLLQGRSGLNRAVDGDIVVVEVFQEENWVAPSDIVLEDEG
AAEASIDEVEIKERELKQAQNKTGEVRPTGKVVGIIRRKWRQYCGILQGGMDGVYQLFVP
SDRSIPKIRIETRQAEFLRTQKLIVTIDSWPRYSRYPHGHFVRALGKIGDQNTENEVVLL
EHDVPHSQFSEEVLSCLPTLPWIITEEDEKRRVDIRHIDICSVDPPGCTDIDDALHCRQI
DDDKLEVGVHIADVSHFIRPGTAIDIEAASRATTVYLVNKRIDMVPELLSSNLCSLRGGE
ERFAFSCIWEMDKEANILNTRFHKSIIKSKAAMTYEEAQIIIDDKSKNDTVAFSLRGLNM
LAKILKKRRLEKGALVLASPEVKIHMDSETMEPLDVEVKKLFETNSMVEEFMLLANISVA
EKILEDFPECAMLRRHPTPPSTNFDPLIKAGKHLGFDINIETGKKLAESLDAAVKSDNIY
MNTMLRILATRCMLQAVYFASGTLQKNEFFHYGLAVPLYTHFTSPIRRYADIIVHRLLAV
SCGSDATYPDLLDKQKTGNLCQNLNYRNRMAQYAGRASVAFNTHLFFKGKIQDEDGYVLY
VRKNALQILIPKYGLESTLFLARKGETSNIFEYNEDDQSQKAGDIVIHSFDPVKVRLSLD
SNNIQHEKFVLQMVYPYVEGFSVPPLTEPNEAMETNQDTDKKKKGEEVPRKKKKKSHKNV
D
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgtttactactaaggcatttattaaaaagacaaaaattggtcattttctaaagaatgtt
agggaacattatatacgagatgacatcttttgtggaatttcaacctgtgaaaaatgccat
cctgtggactcaaacttaagtacaacccatcaaaacaaatgtggtctctttgattttaac
cattttctaatactagacaccaacatcattctagatcagatggacattttggatgagcca
atacttggaaatgtaattattttgcacacagtcctgaaagaggttaaacatcgtagttta
ccaacatacaaaaggcttcacagcattatcgagaatcccagtagacatttctatgtcttt
accaacgaccatcataaagatacatatattaaacaaaaagatggtgaattaattaatgat
tacaatgatcgatgcataagaaagtcatgttcatggtatattcaacatctgcctaaagag
aaatttgtatttcttagtgacgatgcaaataacagaaatatagcacttgaagaaggaata
ccagcatgtacaataaaggattatatcacaaatgtaccagataactcaatcttacaagac
aaactttctaaaaaagaaatcgctattgatagttacacaaaagatgtatttcctccgcat
ttatcaaatgtggcactgctaaccggtgttaaagaaggaaaactgtatcaaggtactttt
cgggcttctagggataactttttggaaggattcgtgaacgttgatgcttttaaagattcg
gtattattgcaaggaagaagtggtctcaaccgcgcggtggacggagatatcgtagtagta
gaagtgtttcaagaagaaaattgggtagctcccagcgatatcgtattagaagacgaaggt
gccgctgaagctagcatcgatgaagttgaaattaaagagcgcgaattaaaacaggcgcaa
aacaaaacgggagaggtaaggccaacaggaaaggtcgtcggaatcataagaagaaaatgg
cgacaatattgcgggattttgcaaggcggaatggatggagtttatcaattgttcgtgcca
tccgatagaagcatacctaaaattaggatagaaacaagacaggctgaatttttgagaact
cagaaattaattgtaacgatagattcgtggcctagatattcaaggtatcctcatggtcac
tttgttagagccttaggtaaaattggagatcagaatacagaaaatgaagtagttttgcta
gaacacgatgtgccacacagtcagttctcagaagaggttcttagttgtttgcccacttta
ccttggattattacagaagaagatgaaaaacgaagggtagatatccgtcacatagatatt
tgctccgtggatccacccggttgcactgatattgacgacgccctacattgccgtcagatt
gatgacgataaactggaagtaggcgttcacatagccgatgtatcacactttataagaccc
ggtaccgctatagacatagaagctgcttcaagagctactactgtatacttagtcaataaa
agaattgatatggtacctgaacttcttagttctaacttgtgttcattgagaggtggagaa
gaacgatttgctttttcgtgtatttgggaaatggataaagaagcaaatattttgaatact
cgtttccataaaagtatcattaaatctaaagcggcaatgacgtatgaagaggcgcaaatt
attattgatgataagagcaaaaacgacaccgttgcattttctttacgaggtctcaatatg
cttgctaaaattttaaagaaacgaagattagaaaaaggagcccttgttttggcgtctcct
gaagtgaaaattcatatggactctgaaacgatggaaccactagatgtagaagtgaaaaaa
cttttcgaaactaattcgatggtagaagagttcatgttgttggcgaatattagcgtggca
gaaaaaattttagaagattttcccgaatgtgcaatgcttagaagacatccgactccacct
agtactaattttgatccattaatcaaagctggaaaacatctcggtttcgacattaatata
gagaccggcaaaaaattagcagaatctttagatgccgctgtaaaatcagacaacatctat
atgaacactatgctaaggatactagctacacgatgcatgttacaagccgtgtattttgct
agtggaactctacagaaaaatgaattctttcattacggtttagcggtgccactttataca
cattttacttctccgatcagaagatatgctgatattatagttcacaggctacttgcagtg
tcttgtggatcagatgctacttatccagacttattggataaacagaaaaccggcaattta
tgtcagaacttgaactacagaaacagaatggcccaatatgcaggaagagcatcagtagca
tttaatacccacttgtttttcaaaggtaaaatccaagatgaagacggctatgtactttat
gtaagaaagaatgcattgcaaatactcattccaaagtatggcttagaaagtacgttgttt
ttagcccgaaaaggagaaacttcaaatattttcgagtacaacgaagatgatcaaagccaa
aaagcaggagatatcgtaatccattcttttgatccagtaaaagtaagacttagtttggat
tccaataatatccaacacgaaaagtttgttttgcaaatggtatatccatatgtagaagga
ttcagcgtaccgccgcttaccgaacctaatgaagcgatggaaactaaccaggatacagat
aaaaagaaaaagggcgaagaggttcctagaaagaagaaaaagaaatcacataaaaatgta
gattaa
DBGET
integrated database retrieval system
