Desulfosarcina widdelii: DSCW_12340
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Entry
DSCW_12340 CDS
T06303
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dwd
Desulfosarcina widdelii
Pathway
dwd03030
DNA replication
dwd03430
Mismatch repair
dwd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dwd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSCW_12340 (dnaE)
03430 Mismatch repair
DSCW_12340 (dnaE)
03440 Homologous recombination
DSCW_12340 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dwd03032
]
DSCW_12340 (dnaE)
03400 DNA repair and recombination proteins [BR:
dwd03400
]
DSCW_12340 (dnaE)
Enzymes [BR:
dwd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSCW_12340 (dnaE)
DNA replication proteins [BR:
dwd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DSCW_12340 (dnaE)
DNA repair and recombination proteins [BR:
dwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DSCW_12340 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
CcmE
Motif
Other DBs
NCBI-ProteinID:
BBO73817
UniProt:
A0A5K7ZBV1
LinkDB
All DBs
Position
complement(1295001..1298543)
Genome browser
AA seq
1180 aa
AA seq
DB search
MSQETSDFVHLHVHTQYSLLDGAIRLGDLFKRAKEFHMPAVALTDHGTMFGALDFYQQAL
SNGIKPIIGCECYLAPRTLKDKTPLDKAGARHLVLLAENQQGYRNLCKLATIGQLEGFYY
KPRIDKAALAEHAEGIIALSACLKGEVPQHILAGKMDKAEEAALNYLAMFGEGNFFLELQ
YNGIAAQEKVNQGLVELSRKLDIPLVATNDCHYLDQKDAKAHEVLLCIQTQKTMADEDRF
VFDSDQLYFKPPEEMKRHFAGYPGAIENTVAIADRCYVEFDFKTYHFPQFDAESGKTADE
LFEAQVREGYERRMEPVRRKNPDLDETVYRERLEYELSTIKDMGFPGYFLIVADFIRYAK
ENGIPVGPGRGSAAGSLVSYAMSITDLDPIEHGLIFERFLNPSRISMPDIDVDFCIHGRE
RVYNYVVERYGGGDYVAQIITYGKMKAKLVIRDVGRALGLPLAEVDTIAKLIPDSLKMTI
DKALKEEPKLAEMVKTDPRIAELIEISRALEGLSRHASTHAAGVVIGDKPLVEYLPLYKG
KKGEVVTQFDMKKVEDIGLVKFDFLGLRNLTVIDHALKSIADQGKTVPDLANLPMDDEKT
FVLLQSGDTTGVFQLESSGMKNLMVRLHPESFEDLTALVALYRPGPLDSGMVDDFVDRKH
GRKEVVYPVASLEPILQETYGVMVYQEQVMQVAGALAGYTMADADSLRKAIGKKIADLMA
KHREKFVTGAVKNGVDKAVATELFDLIEKFGGYGFNKSHSAAYALIAYQTAYLKAHFPVE
FMAALLTSEIDTIDGVVKFINECRAHDIEVLPPDINESSTLFTAVDDRIRFGLAAVKNVG
GAAVDLIIAEREANGPFASLFDFCQRVDLTKVNKRVLESLIRCGAFDSTGVYRSRLMAVL
EEALDYGQRIQRERNSAQMSLFDTGSGEDAAINLPAVPAIDEWDDHEKLQQEKETLGFFV
TGHPLDRYKEIIEKFTNVDALSLREVADKSAVRIGGTISAAKVIRTRKDDLMGFATVEDL
HGSVEVVVFPSIYANCADLLAADTAVLVQGAAQVEESGVKILADQIIPMDQAEATWTIQV
RLMVDPNKTDREKMTRLRSVLKRYPGPCKGFIHICLDGQAEAVVSMDEGMGIRYCDAMAR
EVDGILGRGAVQTRVSDAASAMRNSDLNGRRNNGRQYARN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccaggaaacttccgatttcgtccacctacacgtccacacccagtacagcctgctg
gacggcgccattcgcctgggggatctgttcaaaagggccaaggaatttcacatgccggcg
gtggcgctcaccgaccacggcaccatgttcggcgccctggacttttatcagcaggccctt
tccaacggaatcaagcccatcatcggctgcgaatgctacctggcaccccgcacgctgaaa
gataaaacgccgctggacaaggcgggagcgcgtcacctggtgctgctggcagaaaaccag
cagggctaccgaaatctgtgcaaacttgccaccatcgggcagttggaaggcttttactac
aaaccccgcatcgacaaagcggcgctggccgagcatgctgaaggtattatcgcgctgtcc
gcctgcctcaaaggggaggttcctcaacacatcctggccggaaagatggacaaggccgaa
gaggcggcccttaactatctcgccatgttcggcgagggcaacttttttctggaactgcag
tataatggtattgcggcccaggaaaaggtcaaccaggggttggtcgaactgagccgcaag
ctggacatcccgcttgtggccaccaacgactgccactacctggatcaaaaagatgccaag
gcccatgaggttcttttgtgcatccagacccagaagaccatggccgacgaggaccgcttc
gttttcgattccgatcagctctatttcaaacctcccgaggagatgaagcgccactttgcc
ggatatcccggtgccatcgaaaacaccgtggccattgccgaccgctgctatgtcgagttc
gatttcaagacctaccatttcccgcagttcgacgccgaatccggaaaaaccgcggacgag
ctgttcgaggctcaggtgcgcgaaggctatgaacgccgcatggaaccggtacgccgtaaa
aaccccgatctggacgaaaccgtgtaccgggaacggctggagtacgaactttcaaccatc
aaggatatgggatttcccggctattttctcattgtggccgatttcatccgctatgcaaag
gaaaacggaattcctgtggggcccggccgcggttcggctgccggcagtcttgtctcttat
gcgatgtccatcaccgacctggatcccatcgagcatggtctgattttcgaacgtttcctg
aatccgtctcgcatcagcatgcctgacatcgatgtggatttttgcatccacggacgggag
cgggtttacaactacgtggtcgagcgctacggcggaggagactacgtggcccagatcatc
acctacggcaaaatgaaggccaagctggtgatccgggacgtgggaagggcgctggggctg
cctctggcggaggtggacaccatcgccaagctgattcccgacagcctcaagatgaccatc
gacaaggcgctgaaagaggagcccaaactggctgaaatggtcaaaacggacccgcgcatc
gccgagttgatcgaaatcagccgcgccctggaagggctgtcccggcacgcctcgacccat
gccgccggcgtggtgatcggcgacaaacccctggtggaatatctgccgctgtacaaggga
aaaaagggagaggtcgtcacccagttcgacatgaagaaggtcgaggacatcggcctggtg
aagttcgattttctggggctgcgcaacctgacggtgatcgaccatgccctgaaaagcatt
gccgatcagggcaaaacagtgccggatctggccaacctgcccatggacgacgagaagacc
ttcgtactgctccagtcgggagacaccaccggcgtttttcaactggaatcctccggcatg
aaaaacctgatggtgcgcctgcacccggaatcctttgaagatcttaccgccctggtggcc
ctgtatcggcccggccccctggacagcgggatggtggacgatttcgtggaccgcaaacac
ggccgcaaggaagtggtctatccggtggcttccctggagccgatcctccaggaaacctac
ggggtgatggtttaccaggagcaggtcatgcaggtggccggtgcactggccggctacacc
atggccgatgcggacagcctgcgaaaggccatcggcaagaagatcgccgatttgatggcc
aagcatcgggagaagtttgtcacgggcgccgtgaaaaacggcgtggacaaggccgtggcc
acggaactgttcgatctgattgaaaagttcggcggctatggattcaacaaatcccacagc
gcggcctatgcgctgattgcctaccagacggcatacctcaaggcccacttcccggtggaa
ttcatggcggctctgctgaccagcgaaatcgacactatcgacggggtggtaaaattcatc
aacgagtgccgggcccacgacatcgaagtgctgccgccggacatcaacgagagcagcacc
ctgtttaccgccgtcgacgaccgcatccggttcggtctggcagcggtgaaaaacgtgggc
ggagcggccgtcgatctgattatcgccgagcgtgaagccaacgggccgtttgcttccctg
ttcgatttctgccagcgggtggacctgaccaaggtgaacaaacgcgtcctggaaagcctg
atccgctgcggcgccttcgattccactggcgtataccgatcacgcctcatggcggtgctc
gaagaggccctggattacggacagcgcatccagcgggagagaaacagcgcccagatgagt
ctgttcgataccgggagtggagaagatgcggccataaacctgcccgccgttccagctatc
gacgaatgggacgatcacgagaagttgcagcaggagaaagagacgctgggcttcttcgtc
accggccatccattggatcgctacaaggagattattgagaaattcaccaatgtcgatgct
ttgagtcttagggaagtggccgacaagagcgccgtgcgcatcggcggtaccatcagcgcc
gccaaggtgatccgcacccgcaaggacgatttgatgggttttgccaccgtcgaggatttg
cacggcagtgtggaagtggtggtctttccgtccatctacgcgaattgcgccgatcttctc
gccgcggataccgccgtactggtccagggagcggcccaggtggaagagagcggtgtgaaa
attctcgccgaccagatcattcccatggatcaggccgaggcgacctggaccattcaggtt
cggttgatggttgacccgaacaaaaccgaccgggagaaaatgacccggctgcgatcggtt
ttaaagcgctatcccggcccctgcaagggattcattcacatctgtctcgacggtcaggcc
gaagccgtcgtctccatggatgaaggaatggggattcgctactgcgacgccatggcccgg
gaggtcgatggcatcttggggcgcggggccgtgcagactcgggtcagcgacgcggccagc
gccatgcgcaacagcgatctcaacggccgccgcaacaacgggcgccaatacgccaggaat
tga
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