Desulfosarcina widdelii: DSCW_28230
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Entry
DSCW_28230 CDS
T06303
Symbol
rho_1
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dwd
Desulfosarcina widdelii
Pathway
dwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCW_28230 (rho_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dwd03021
]
DSCW_28230 (rho_1)
03019 Messenger RNA biogenesis [BR:
dwd03019
]
DSCW_28230 (rho_1)
Transcription machinery [BR:
dwd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DSCW_28230 (rho_1)
Messenger RNA biogenesis [BR:
dwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSCW_28230 (rho_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
S1CSD-TOTE-2
AAA_25
AAA
AAA_24
ATPase_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBO75406
UniProt:
A0A5K7Z136
LinkDB
All DBs
Position
2961393..2962475
Genome browser
AA seq
360 aa
AA seq
DB search
MESVSGHLEILDKGFGFLRNIDNNYQAGPTDTFVPAFLIGKLGLREGTLIEGQGEPGNPG
NRNLKLARVEQVNGLSLDRYAQTETMHTMTSINPDQRLRMAQGPKDLTGQALDLIVPMGR
GQRGLIISPPKSGKTTLLRHMANSVTANDPEMNVFVLLVNERPEEVTDFKRGLKNAHVLY
SSSDQSIAQHMRMTRLAVHSAMRCAETGRDTVVFIDSLTRMARAFNAETESYGRTLSGGL
GANAMEVPRKIFGAARNIEDGGSLTIIATILVETGSRMDDIIYQEFKGTGNMDLVLSREC
AEHRVFPAIDIRQSGTRKEELLLDKEELKKVVDIRRALSKKDTTEAMADLIEYLDRRSKN
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
gtggaatcggttagcggccacctcgaaatcctggacaaggggttcggctttctgcgaaac
atagacaacaattaccaggccggcccgacggatacctttgtcccggcgtttttgatcggc
aaactcggactgcgggagggaaccctgatcgaaggtcagggagaaccgggcaacccaggc
aaccggaatctgaagcttgccagggtggagcaggtcaacggcctgtccctggaccggtat
gcccaaaccgaaaccatgcacaccatgaccagcatcaacccagatcagcgtctgcgcatg
gcccagggacccaaagacctcaccggccaggctctggacctcatcgtccccatgggtcgg
ggccagcggggattgatcatctctccgcccaaatcgggcaagaccacactcttgcggcac
atggccaactcggtgacggccaacgatccggaaatgaatgtctttgtcctgctggtcaat
gaacggccggaggaggtgaccgattttaagcgggggcttaaaaatgcccacgtgctctac
tcctcttcggatcagagtatcgcgcagcacatgcgcatgactcgtctggccgtgcactcg
gccatgcgctgcgccgaaaccgggagggacacggtagtctttatcgattccctgacccgc
atggcccgggccttcaacgccgagacggaaagctacggccggaccctttccggtggactg
ggtgccaacgccatggaagtgccgcgcaaaattttcggtgcggcccgcaacatcgaggac
ggcggatcgctgaccatcattgctaccattctggtggagaccggcagccgcatggacgac
atcatctatcaggaattcaagggaacgggcaacatggacctggtactcagccgggagtgc
gccgagcaccgggtctttccggccatcgacatccggcagagtggaacccgcaaggaagaa
ctgctgctggacaaggaagaactcaaaaaagtggtggatatccgacgggccttgtcaaaa
aaagatacgaccgaagccatggcggatctgattgaatatctggaccgacgaagtaaaaac
tga
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