Desulfosarcina widdelii: DSCW_38730
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Entry
DSCW_38730 CDS
T06303
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dwd
Desulfosarcina widdelii
Pathway
dwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCW_38730 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dwd03019
]
DSCW_38730 (pnp)
03016 Transfer RNA biogenesis [BR:
dwd03016
]
DSCW_38730 (pnp)
Enzymes [BR:
dwd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DSCW_38730 (pnp)
Messenger RNA biogenesis [BR:
dwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSCW_38730 (pnp)
Transfer RNA biogenesis [BR:
dwd03016
]
Prokaryotic type
tRNA degradation factors
DSCW_38730 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
KH_PNO1_2nd
KH_SLS1_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
BBO76456
UniProt:
A0A5K7Z3X4
LinkDB
All DBs
Position
complement(4152677..4154773)
Genome browser
AA seq
698 aa
AA seq
DB search
MEYTFKADVGGKPLSIQAGKVAKQASGSVVVQYGETVVLVTVVSANDVRDTNFLPLSVEY
QEKVYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKDYRYETQVIATVLSMDQ
ENDPDMLAMVGASAALEISDIPFAGPIANVRVGRIDGQFVANPTLAQWAESDINIIVAGS
RTGVVMVEGGGDVVSETDMLEAIFFGHQAIQPLIDIQEELKAAIGRPKRPFTPPEKDPVL
VERVVEMARTPLREALTIPEKMKRYEAVRAAKAQVVESLGEEAADRGAEVGAILGDLQKQ
ICRDMILKEGRRIDNRRFDEIRPITCEVGVLPRPHGSALFTRGETQVLGVLTLGSGGDEQ
RVETLSGEENRPFMLHYNFPPYSVGEVKRVGSPSRRDIGHGGLSTRAIERVLPDKEDFDY
TIRIVSEVLESNGSSSMGTVCSGILALMDGGVPIKAPVSGIAMGLVKEGDQVVILSDILG
DEDHTGDMDFKVTGTTEGITALQMDIKIHELSREILEKALEQAKEGRLHILGKMLQALAT
PREAISPFAPKIVAIKINPDKIRDVIGPGGKVIRAIQSETNTKIEIDDSGLVKIAATSAE
DGDAAREQIESLTMEPEVGAIYEGKVVKTTDFGAFVQIVPGTDGLVHISQLANRRVGKVT
DVVKEGDMLKVKVLEISKDGKIRLSHKAVLADEHKSEG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaatatacattcaaagcggatgtcgggggcaaacccctgagcatccaggcgggcaaa
gtcgccaaacaggcttccggatcggtcgtggttcaatacggcgaaacggtggttctggta
acggtggtttccgccaatgacgtaagagacaccaatttcctgccgctttccgtagagtac
caggaaaaagtatatgccgccggacggatcccgggcaattacttccgccgggagatcggt
cggcccagcgaaaaagagacgctcaccgcccgtctgatcgatcggccgatccgtcctttg
tttcccaaagactatcgctacgagacccaggtcatcgctacggtattgtccatggatcag
gaaaacgatccggacatgctggccatggtcggtgcttcggcggcccttgaaatttcggac
atcccctttgccggaccgatcgccaatgtccgcgtggggcgcatcgacggtcagtttgtg
gccaaccccaccctggcgcagtgggcggaaagcgacatcaacatcattgtggccggttcc
cgaaccggcgtggtcatggtggaaggcggcggtgatgtggtcagcgaaacggacatgctg
gaagccattttcttcggccaccaggccatccagcccctgatcgacatccaggaagaactc
aaggccgccatcggccgcccaaagcggcctttcactccgccggaaaaggatccggtgctg
gtcgagcgggtggtcgagatggcccgcacccctttgcgtgaagctttgaccatccccgaa
aaaatgaaacgctacgaggccgtgcgcgccgccaaggcccaggtggttgaatcgctggga
gaggaagcggccgaccgcggtgccgaagtcggcgccattctcggcgacctgcagaagcag
atttgccgggacatgattctgaaggaaggccgccgtatcgacaaccgccgttttgacgaa
atccgtcccatcacctgtgaggtgggcgttctgccgcgtcctcatggcagcgcgctgttt
acacgcggcgaaacccaggtactgggggttctgaccctgggatcgggtggagacgaacag
cgcgtcgaaaccctcagcggcgaagagaatcgtccgtttatgctgcattacaactttcct
ccctattcggtgggcgaggtcaaacgcgtgggatctcccagccggcgggacatcggccat
ggtggcctttccacccgcgccatagaacgggtgctgccggacaaggaagatttcgactac
accatccgcatcgtttccgaagtcctggagtctaacggttcctcatccatgggaacagtg
tgctcgggaatcctggccctgatggacggcggcgtgcccatcaaggcgcccgtttccggc
atcgccatggggctcgtcaaagaaggcgaccaagtggtgatcctgtcggacatcctgggc
gatgaagatcacaccggcgacatggacttcaaggtgaccggtaccactgaaggcatcacc
gccctgcagatggacatcaaaattcacgagctttcccgggaaattctggaaaaggctttg
gaacaggccaaggaaggtcgcctgcatatcctgggcaagatgctccaggcgctggctacg
ccccgcgaagcgatttccccgtttgctccgaaaattgtggccatcaaaatcaacccggac
aagattcgtgacgtcatcggccccggaggcaaggtgatccgggccattcagagcgaaacc
aacaccaagatcgaaatcgacgacagcggcctggtgaaaattgccgccacctcggccgag
gacggcgatgccgcccgtgagcagatcgaatcgttgaccatggaacccgaagtgggggcc
atttacgaaggcaaggtggtcaagaccaccgatttcggtgcatttgttcagattgtcccc
ggtaccgacggcctggtgcacatcagccagctggccaaccgccgggtgggtaaggtgacc
gatgtggtcaaggaaggcgacatgctgaaggtcaaagtcctggaaatttccaaggacggc
aagatccggctcagtcacaaagctgtcctggcagatgaacacaaatccgaaggttag
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