Drosophila willistoni: 6643309
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Entry
6643309 CDS
T01067
Name
(RefSeq) uncharacterized protein LOC6643309 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dwi
Drosophila willistoni
Pathway
dwi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dwi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6643309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dwi03021
]
6643309
03019 Messenger RNA biogenesis [BR:
dwi03019
]
6643309
Transcription machinery [BR:
dwi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
6643309
Messenger RNA biogenesis [BR:
dwi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
6643309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
zf_PCFS4
Pfc11_Clp1_ID
Siah-Interact_N
Motif
Other DBs
NCBI-GeneID:
6643309
NCBI-ProteinID:
XP_023032075
LinkDB
All DBs
Position
2L
Genome browser
AA seq
1971 aa
AA seq
DB search
MDQLFQSYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYARVIVRVVEYYIS
QVPPEFKLPILYLIDSIIKNVKSSYVQLFGQCIVNIFLTAFESVQHSQSQVLEKVRERMY
ALRQTWNEVFPPSKLYELDVKVKRLDNNWPITAKQPTTKIHVNPAIHVNPNFLKTGMVTV
PTLPSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLNQATDAIQGPTNPILM
PAPTPPTTMRPPLVMEAPSSGSGGMRNARPMGPGAVPSLPGPQQQQASGVKPKVHPVNPA
LLNSVRPRDPRLARQMQSQNGPMAAPLRSDPRLEAKSSSSSSQKSSRSRSKSPNRNSGSS
RSSKSSSSPHRGSSSSSNSSRKRSESKSSTASSSSSGSDSRHKGSPTKRSSKQSTSKELS
SDRYARNGSPSTAASKRKSNSPASSPSKSKRNASQKSLSSGSRGKSSTSSSSTRSRSRSP
QFVDVDMRRSPEKSKVSQAAPSSSTSAAATIPNTATSSKAIIVNDLEKPYLSTAATATPL
SLLIPASSSVKQSSPSPVPSSSSSSAAAAAAALSITTATTTTSSSSSLSRSGNVSSDVIN
NLLPVSTSGGGNPGEKRPAEPVVSEILDDDELPPQQKRSKSAKLDALFGSEDVDLRRVIP
STTLAGPVIVLEDDSMDNCDANKATSKVASPPKKATLEELRARVSKSVRESQKMANKDKP
KEHPVAQRLKQLAELRNSDDSQEAHDEKVRTILSQAQEMFENNGMNQEQYKDLVQKVVAI
NESGKLKEASRRQRGSKDMDVVVDVERNAAKEAVLRKRIPKLKGNENHLHREVGSPRSDG
SPRYDEQPTAASAAETSSSKRVEKPPLNNKRERENKRRKPSKWGDQVADPVAAQRAAWQL
ANNNNNNNANKRGGPNGNGGGPPQTNFRGMPWQQPPPSMVMGVMQPHPTHTPSMIPMPPV
PPPAPNLGITKAINSFDNPMADVVRSITIDGGSKEIRFYNQVAVIFMDGDEPHEIGFQHG
QRVILIDNNEPLPLNFNDEYKPFHLDGQLHRIRFGFPSRELYIDDHWYEIYFGGPAVSLP
IGNKLHVLKAEGPPPNVDIGRIRRDLVVGKINMIVDAHTIIPLFLDARQQNFQLGAEQHS
LQFVDSFQYALMDGQLQRIEYGGLPKGMKLNGGRSCFIRFGTLPKGVIAGRTHVADMVYI
KTDAPAEPPQPPPLIVKPAPPPPTAPIVPGIGVVAPVLDVASTIGAPAVPLPAAAAALSN
LNIDELFQKLVSSGIIGGGAAAPTAAAPTATAGAGAGAGAGATASASSAATVVPGNTAAP
AEEVSAASPVEPIQRIELNKPETIKTRQSAVVATLYLGMQCSSCGVRFPPEQTIKYSQHL
DWHFRQNRRDRDTNRKATSRRWYYDLNDWRQYEEIEDVEEREKNFLEAQGSGGTTADAFD
DLSQQRSMDSPVPTCPAGADDVDRCCDMCHEKFEQFYNEELEEWHLRSAIRVEDKTYHPL
CYEDYKTSLNPPSINEDEAKTGTKKDLDMSNSDDNATDILIKVEDLDDDDEDGNAKHSFD
DDDDDVIVLPNEEPSVTEIVDDDDDDEYVPANVTRLEMGGVNDESSQEKPASLDVEAEVE
KGAEVEIEKQVNNKQSDNDDESDVEIKEPHIPFTDLDTYVEKPLLNVKIKEEPKDDDEEE
EDEDDGFEDVGTVEPLLPLPLDEISINSSETQTQTIGSSASPATLERPASVASLGDEDVE
NGKEKTMEETEPESTHNLSAAGPAPALPLASIVNKIKINITKNSNSNSHNSASSNTTTTA
TAPTATTSAGSGTADVVSPISVIGGQSVSEPSATAASSQLQQQASAIQTISTIPVLCGGN
TFAPKITSSSSSSSSGVISSISVIGSYVTSSSNSNRNPTPGGGVTSSSVPSTVVTTPAPV
GASTTATPAVVEAAAEPEPIIELKPALRNVTLKKTKAVQNGTETSGLCSIM
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atggaccaactatttcaatcgtatcgcgatgatgagcgacgtattggtgaggagtattta
tccagtctgcaggatttgaattgcaatagcaagccattaatcaatatgctgaccatgttg
gcggaggaaaacatcaactatgcccgtgttatagttcgagtggtggaatattacattagc
caggtgccgcccgagttcaaattgcccatcctatatttaattgattcaataattaagaat
gtgaaaagcagttacgtccagctatttgggcaatgtattgtcaacatatttctgactgcc
tttgaatcggtccagcattctcagagtcaggtgctggagaaggttagggagcggatgtat
gctttgcgtcaaacatggaatgaagtgttcccaccatctaaattatatgaattggatgtg
aaagtgaagcgcttggataataattggcccattacggccaaacaaccaacgaccaaaata
catgtgaatccggccattcatgttaatccgaattttctcaaaacgggtatggttactgtg
cccactcttcccagcgatatggaggagatacttcaggccaaaaccagagagctactggaa
ctcaagaaacgtaaattggaactagagctggagcagaccaagaagcatttagaagagcaa
gagcgacagctaaatcaggccacagatgcaatacaagggcctacaaatccaatattgatg
ccagcaccaaccccaccaacaacaatgcgacctcctctagttatggaagcacctagtagt
ggtagtggtggcatgcgcaatgcccggccaatggggcctggagcggtgccgagtctgcca
ggaccacaacagcaacaagcatctggtgtgaagccaaaagttcatcctgttaatcctgct
ctgcttaactcagtacgacctcgagatccacgcctggcacgtcaaatgcaatctcaaaat
ggtccaatggctgcacctttgcgttctgatccacgcttggaagccaaatcctccagttcc
tcttctcaaaagtctagtcgctcacgcagcaaatcacctaatcgcaacagcggcagcagt
cgctccagcaagagcagcagtagcccacatcgcggcagttcctcttcatccaattctagt
cgcaagcgtagcgaatcaaaaagttccacagcgtcttcatcctcatcgggatcagatagc
agacataagggatcaccaaccaaacgatcatccaagcaatccacttccaaagagctttcc
tcagatcgatatgcacgtaatggttcgccctcaacagcagcatctaagcgcaaaagtaac
tcaccggccagttcaccatcaaagtccaagcgaaatgcttcacaaaaatccttatcgagc
ggttcacgtggaaagtcatcaacgtcgtcgtcgtccactcgatctcgaagtcgttcaccc
caatttgtggatgttgatatgcgtagatctccagaaaaatcaaaggtttctcaagctgct
ccatcttcatcaacatcagcggcagcaacgattccaaataccgcaacatcaagcaaagca
atcattgtgaatgatttagagaaaccgtatctatcaacagcagcaacagcaacaccatta
tcactgctaatcccagcatcgtcgtcagtcaagcaatcatcaccatcgccagtgccctca
tcatcatcatcatcggcggcggcggcggcggcggccttatctatcaccaccgccacaact
acaactagcagcagctcctcattgtcgcgttcgggtaatgtatcatcggatgtcattaac
aatctgttaccggtttcaacttctggtggtggaaatcctggcgagaagcgacctgctgag
ccagtcgtatccgaaatcctagatgacgatgaactaccgccgcagcagaaacgtagtaaa
tccgccaaactggatgctcttttcggcagcgaagatgtggatctaagacgtgtgattcct
agtactactctggccggacccgtaattgtgctagaagatgattcgatggataattgtgat
gctaataaggcaacatcgaaagttgcttctccaccgaaaaaggctactttggaagaactg
cgggcccgagtatccaagtctgtgcgtgagagccaaaagatggccaataaagataaaccc
aaggagcatcccgtggcgcaacgtcttaagcagctagccgagcttagaaacagtgatgat
tcgcaggaggcccatgacgaaaaggtacgcactattctgagtcaggcacaggagatgttt
gaaaataatggcatgaatcaggagcaatacaaggatctcgtccaaaaggtggtggcaatt
aacgaaagcggcaaattgaaagaggcttcgcgtcgccaacgaggcagtaaagatatggat
gtagtagtcgatgtggaacgcaatgcagcaaaggaagctgttctgcgcaagcgtataccc
aaactaaagggtaatgagaatcatcttcatcgtgaagtgggctcgccacgcagcgatggc
tcacccagatatgatgagcaaccgacagcggcatcggcagctgagacatcatcatcgaag
cgagtggagaagccgcccctcaataacaagagggaaagggaaaacaaaagacgcaagcca
agcaaatggggcgatcaagttgctgatcctgtggcagcgcaaagggctgcttggcaattg
gcaaataataataataacaataatgcgaataaaagaggaggaccgaatggaaacggtgga
ggaccaccgcaaactaatttccgtggcatgccatggcaacagccgccaccatctatggta
atgggcgtaatgcaacctcatccgacacacactccttcaatgattcccatgcctccggtg
ccaccacccgctccgaatcttggtattactaaggccatcaattcattcgataaccccatg
gctgatgtggtgcgcagcattaccatcgatggcggctcaaaggagattcgtttctacaac
caggtagccgtcattttcatggacggggatgagccgcacgaaattggcttccagcatggt
caacgagttatcctcatcgacaacaatgagcctctgcccctgaatttcaacgatgagtat
aagccctttcatttggatggacaattacatcgcatacgttttggtttcccttcccgcgag
ctttacatcgatgaccattggtatgagatctatttcggtggtcccgccgtctccctgccc
attggtaacaaattgcatgtgttaaaagctgaaggtccgccacccaatgtcgacattgga
cgcattcgccgagacttggttgtgggcaagataaacatgattgtggatgcccacactatt
attccgctatttttggatgcacgccagcaaaacttccaactgggagccgagcagcattcg
ttgcaatttgtggacagtttccaatatgctctaatggacggacaattacaaaggattgaa
tatggcggcttgcccaaaggcatgaaactaaacggaggacgaagctgttttattagattc
ggtacactgcccaagggtgtgatagccggcaggacccatgttgccgatatggtgtatatc
aagacagatgcaccggcagaaccacctcaaccgccaccattgatagttaaaccagctccg
cctccgcctacagcaccaattgtccccggcattggtgtcgtagctcctgttttggatgta
gcatcaacaattggcgctccagctgtgcccctaccagcagctgcagctgccctcagcaat
ctcaatattgatgaactgttccagaaacttgtgtcctcgggtataattggtggcggagca
gcagcaccaacagccgctgcaccaacagccactgccggtgctggtgctggtgccggtgcc
ggtgccacagccagtgcttcatctgccgccacagtcgttcctggtaatacagctgcacca
gcggaagaagtttcagccgcctctcccgttgagcctatccaacgcattgagctcaacaaa
ccagagaccataaaaactcgtcaatccgcggtagtggctacgctttatctgggaatgcag
tgcagcagttgtggtgtccgtttccctcctgaacagaccattaagtatagccaacattta
gactggcatttccggcaaaatcgacgagatcgtgacactaaccggaaggccacctccagg
cgctggtactatgatctcaatgattggcgtcaatacgaggaaattgaagatgtggaggag
cgtgaaaagaatttcttggaagcccagggatcgggaggaacaacggccgatgcttttgat
gatctatcccaacaacgttcaatggattccccagttcccacctgtccggccggagctgat
gatgtcgatcgctgttgcgacatgtgccacgagaaattcgaacagttctacaacgaggag
ctggaagagtggcatctgcgcagtgccatacgcgtagaggacaaaacgtatcatccattg
tgctacgaagactataaaacgtcactaaatcctccgtccataaacgaagacgaggcaaag
actggcactaagaaagacttggatatgagcaacagcgatgacaatgccacggatatcttg
attaaagtggaggatctcgatgacgacgatgaggatggcaatgccaagcacagctttgat
gatgacgacgatgacgtcatagtattacccaacgaggagcccagtgtcacggaaatcgtc
gacgatgatgatgatgatgagtatgtgcctgccaatgtgacacggttagaaatgggcggc
gtcaacgatgagtcatctcaagaaaaacccgcctccttggatgtagaggctgaggtagaa
aagggtgcagaggtggaaattgaaaagcaggttaataacaagcaatcggataatgatgat
gaatccgatgtggaaatcaaagagccacacattcccttcaccgatctagacacatatgtg
gaaaaaccactgctgaatgtaaaaattaaagaagaacccaaagatgatgacgaagaggaa
gaggatgaagatgatggcttcgaagacgtgggcactgtggaaccattgctgccccttcca
ttggatgagatctctatcaatagtagcgaaacacagactcaaaccattggctcctcggct
tcaccagccaccctagagcgaccggcatcggtagcctcgctcggggatgaggatgttgag
aatggtaaggagaagacgatggaagagactgagccagagtccacccataatctaagcgca
gctggaccggcaccggctttacctttggctagcatagttaataaaataaaaataaatatc
actaagaactcaaatagtaatagtcataatagtgcctcctccaacaccaccaccaccgcc
acggcccccactgcaacaaccagcgccggatcgggaactgcggatgtcgtgtcgccgatt
agtgtgattggaggccagtcggtatcagagccgtccgcgacagccgcctcctcacagctt
cagcaacaggcgagtgccattcaaaccatttccacaattccagttctctgcggtggcaat
acatttgcgcccaagatcacctccagcagcagcagtagcagcagcggcgtcatcagctcc
atttcggtcattggcagttatgttaccagcagcagtaacagtaatcgtaatccaactcca
ggtggtggcgtaacatcatcctcagtgccatcaacagtggtgacaacgccagcgcctgtc
ggtgcctccaccactgctacacctgctgtcgtcgaagctgccgccgagcctgaaccgata
attgagctaaaaccagcattgcgtaatgttacgctcaaaaagacgaaggcagtgcaaaac
ggtaccgaaacatctggtctgtgctcgatcatgtaa
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