Drosophila willistoni: 6644019
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Entry
6644019 CDS
T01067
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dwi
Drosophila willistoni
Pathway
dwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6644019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dwi03019
]
6644019
03041 Spliceosome [BR:
dwi03041
]
6644019
03009 Ribosome biogenesis [BR:
dwi03009
]
6644019
03016 Transfer RNA biogenesis [BR:
dwi03016
]
6644019
Enzymes [BR:
dwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6644019
Messenger RNA biogenesis [BR:
dwi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6644019
Spliceosome [BR:
dwi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6644019
Complex C
U4/U6.U5 tri-SnRNP related factors
6644019
Ribosome biogenesis [BR:
dwi03009
]
Eukaryotic type
Pre-60S particles
Helicases
6644019
Transfer RNA biogenesis [BR:
dwi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6644019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
6644019
NCBI-ProteinID:
XP_002066969
UniProt:
B4N020
LinkDB
All DBs
Position
2R
Genome browser
AA seq
1050 aa
AA seq
DB search
MDIDELFDCFDEVPPESLEAPPALAATDKKATKRNSKIDDSTTSNGDDDSEAKATKRAKP
QETTDDDDAAAEEKVKLEEEDDEEPSTSRQLDLDDAATLDALRTRIVTHQLEAPESCTHE
VAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQKQAILCIDNSQSVLVSAHTSAGKTVVAEY
AIAKSLLAKQRVIYTTPIKALSNQKFREFTDEFTDVGLVTGDVTINPSASCLIMTTEILR
NMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFA
EWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANA
GEAAKGDQKGRKGGIKGANAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKL
DFNTPEEKKLVDEVFYNAMEVLSEEDRTLPQVENVLPLLRRGIGIHHGGLLPILKETIEI
LFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGL
DDKGIVILMIDEKVSPAVGREIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSF
YQFQNQAALPGLHDQVEEKTRELNKHSIKDEHNIASYHHIRDQLEQYGKQFRSWITKPHY
LLPFLQPGRLIKVTADNQEYDWGIVLNFKNHEKARKNPLKPDPGVTIDVLLHVSEEASKS
GDTEPCKPNERGCMEVVPVANTLITQISSIRVYFPNDLRSADNRKAVLKTIQEAKKRFPL
GPPVLDPVDDMQIKDKEFRNIVAAIAQFEKNLEEHPLHKSADLERVHKRYLDKMKLLGEL
NDLKVELKAARSLLQMEELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMI
FNGVFNELTPPQAVALLSCFVCDEKSNESPQSATELSGPLRSMQDLARRIAKVSSECKLE
LDADSYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQASK
TIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggacattgatgaattatttgattgctttgacgaggtgccgccggagagtttggaggca
ccaccggcattggccgccacagataaaaaagccaccaaaaggaactctaagatcgatgat
agcaccactagcaatggtgacgatgacagtgaagctaaggccaccaaacgtgctaagcca
caggagacaaccgacgacgacgacgccgccgccgaggaaaaggtgaaactggaggaggag
gacgatgaagaaccttcaacttcccgacaattagatttggatgatgcggccacattggat
gctttgcgtacacgtatcgtaacccatcagttggaggcacccgaatcctgtacgcatgag
gtggctgcccatcccgatcaggaatatattccattgaaaccttttagcggagttccagcc
aaagaatatccatttgtattggatccatttcagaaacaggccattctctgtatagataat
tcgcaaagcgttctagtctcggcccacacttcggctggcaagacagttgtggctgagtat
gccatagccaagtcgctgctagccaaacagagagtcatctacaccacaccgattaaggct
ctgtccaatcaaaagtttcgcgagtttaccgatgagttcactgatgtgggtctggtcact
ggtgatgtgaccatcaatccttcagcctcttgcctcatcatgaccacggagattcttcga
aatatgttgtatcgcggcagtgagattatgcgtgaagtgggttgggtgatctttgatgag
attcattatatgcgcgacaaggaacgtggtgtcgtttgggaggagacgcttatcctcctg
ccggacaatgtacgctatgttttcctttcggccaccatacccaatgctcggcaatttgcc
gaatgggtttgccatctgcataagcagccgtgtcatgtggtctacacggattatcgtcca
actccgctgcagcattacatattccctgccggtggtgatggcattcacttgattgtggac
gagaaggggcaattcaaggaagacaatttcaccacagccatggcggttctggccaatgca
ggtgaggcggccaagggcgatcagaaaggtcgtaaaggcggcatcaagggcgccaatgcc
gggcagaccaacatttttaagattgtcaaaatgattatggaacgaaactttgctccggtt
attattttctcgtttagtaaaaaggattgcgagatttatgccatgcaaatggctaaattg
gatttcaatacacccgaagagaagaagctggtcgatgaggtcttctacaatgccatggaa
gtcctgagcgaagaggatcgcactctgccccaagtcgagaatgttttgcccttgctgcgc
cgtggcattggtatccatcatggtggattattgcccattttgaaggagactattgagatt
ctctttggcgagggtcttatcaaggcgctgtttgccaccgagacatttgccatgggcttg
aacatgccggccagaactgtgttgtttacagcaccaagaaaattcgatggcaaggatttc
cggtggattagctcgggcgaatatatccagatggctggtcgtgccggtcgtcgtggtctc
gatgacaagggtatcgttattctaatgattgatgaaaaagtctccccggccgttggacgc
gaaatagtccagggcaaggcagatcccatcaattcggccttccatttgacctacaacatg
gtgttgaatctgttgcgtgtagaggaaatcaatcccgagtatatgctagaacggagtttc
taccaattccaaaatcaagccgctctacccggacttcacgatcaggtggaagagaagaca
cgcgaactgaacaaacatagcatcaaggatgagcacaatattgcttcatatcatcacata
cgtgaccaattggagcaatatggcaaacaatttcgttcctggataaccaaaccccattat
ctattgcccttcttgcagccgggtcgtttgataaaggtcaccgcggataatcaggaatac
gattggggcattgtcttgaatttcaagaaccatgaaaaagctcgcaagaatcctctcaag
cccgatccgggcgtcaccattgatgtgctcctgcatgtcagcgaagaggcatcgaaatcc
ggtgacactgaaccctgtaaaccaaatgaacgcggctgcatggaagttgtccctgtggcc
aatacccttattacccaaataagttcgattcgtgtatatttcccgaacgatttacgttct
gccgataatcgcaaagcagtgctaaaaaccatacaggaagcgaaaaaacgttttcccctc
ggaccaccagttttagatcccgtcgatgacatgcaaatcaaggataaggaatttcgaaat
atcgtggcagccattgcccagtttgagaaaaatctcgaagagcatccactgcacaaatcc
gccgacctggagcgtgttcacaaacgttatttggataaaatgaagcttctaggtgagctg
aatgatctgaaagttgaattgaaagcagctcgcagtctcctgcaaatggaggagctaaag
catcggaaacgtgtgctgcgacgcatgggctactgcaaacccggcgatgtcatcgagttt
aagggccgagtggcctgtgaactgagctcagccgatgagttgctcatgacagaaatgatc
ttcaatggcgtcttcaatgaactaacaccaccgcaggcagtggctttgctctcctgcttc
gtgtgcgacgaaaagtctaatgaatcaccgcagagtgccaccgaactatccggtccattg
cgttccatgcaggatttggcacgacgcatagccaaagtatcatccgaatgcaaactggag
ctggatgccgacagctatgtggacaaattcaaacccttcctcatggatgtcgttctggcc
tggtgcaagggatcgagttttctggctgtctgcaaaatgacagacattttcgagggttca
atcattcgttgtatgcgtcgactggaggagctgttgcgtcaaatgtgtcaggcatcgaaa
actataggcaataccgatctcgagaataaattctccgagggtataagactcctgaagcgt
gacattgtctttgctgcttcgttgtatctataa
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integrated database retrieval system
