Drosophila willistoni: 6648598
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Entry
6648598 CDS
T01067
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dwi
Drosophila willistoni
Pathway
dwi03013
Nucleocytoplasmic transport
dwi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dwi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6648598
03015 mRNA surveillance pathway
6648598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dwi03019
]
6648598
Enzymes [BR:
dwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
6648598
5.6.2.5 RNA 5'-3' helicase
6648598
Messenger RNA biogenesis [BR:
dwi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
6648598
mRNA cycle factors
Common to processing body (P body) and stress granule
6648598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
AAA_22
AAA_16
NPHP3_N
ATPase
nSTAND3
SRP54
AAA_32
AAA_10
Motif
Other DBs
NCBI-GeneID:
6648598
NCBI-ProteinID:
XP_002070897
UniProt:
B4NDR4
LinkDB
All DBs
Position
Unknown
AA seq
1208 aa
AA seq
DB search
MSVDTYAPSSALSFLDMDENELLRGADTQPTQYDYRDFTMPSSTQGDDQQQTQPQPVERQ
IRGPVGGSHPRLASITQDLADLQFEEEDDEVGSSSYVKELPAHACKYCGIHDPATVVMCN
NCKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHGDGPLGETILECYSCGVRNVFVLGFIP
AKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLPWLVKQPSEQGQLRARQIS
AAQINKLEELWKENIEATFQDLEKPGNDCEPAQVLLRYEDGYQYEKTFGPLVRLEADYDK
KLKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELYHPWSETG
HVIKVPDNFGDDVGLEMKTSSNAPVKCTSHFSVDFIWKCTSFDRMARALRIFAMDRNSVS
NYIYSRLLGHGRPDGTDEVLFRGPQPKLYSAPHLPELNRSQVYAVKHALQRPLSLIQGPP
GTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDS
PVSFLALHNQISNIKANTELKKLQQLKDETGELSSADEKRYRSLKRSTENQLLEAADVIC
CTCVGAGDGRLSRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKL
DFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGVKPEQIGIITP
YEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYKDRKVLVEGSLNNLKESMIHFQK
PKKLVNNLNMGAHFMSTMMADAKEVMVPGSIYERSSNFNRQMGPSHQQQLPQQQQQNHQN
GGGPFQAQSAIGGGGGGYNLPNSNGANALMNNYQASSNNNYAAGAPGQSNAATWLHHDSI
GYISNDHNAATLGNMPVPVGMFMNMSNLPPRFYNQHQQAIMAAKQNRAIQQQQQQINYAA
TSGGGAGSGGGTSGGNVSASLGSGITTAVGGHKAAKGQKQGKSRTPAAAGAANAAAATTT
TNMTSPFSQQPMAAMSLQMTQPSGFALSQQPELSQDFGQISQMDGLLSQDVSFNVPGERS
LNQFSQPY
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtatgcgcctagctcggcgctgtcattcctggacatggatgagaat
gagctgctgcgtggtgcggacacacaacccacacagtatgattatcgtgattttacgatg
ccctcgtcaacccaaggtgacgatcaacagcaaacgcaaccacagccagtagagcggcag
atccgtggccctgttggcggttcacatcctcgtttggccagcattacccaggatttggct
gatctacaattcgaggaggaagatgacgaggtgggcagtagttcgtatgttaaggagtta
ccagcacatgcctgcaagtactgtggcatccacgatccggccacagtggttatgtgcaac
aattgcaagaaatggttctgtaatggacgcggcagcacgtctggctcccatattgtcaat
catctggtacgggccaagcatcgagaggtcactcttcatggcgatggacccttgggcgaa
actatactagagtgttattcgtgtggtgtgcggaatgtctttgttttgggcttcataccg
gccaaggctgattcagttgtcgttcttctctgccgtcagccatgcgcagctcaaaattcc
ctcaaagatatgaattgggatcaagagcaatggaagccgttaatagcggatcgctgtttt
ttgccatggctagtcaagcagcccagcgaacagggtcaactgagggcgcgccaaatatcg
gctgcccagatcaataaactggaagagctgtggaaggagaacatagaggccacgtttcaa
gatctggaaaagccaggcaatgactgcgaaccggcccaggtgttgttgcgctatgaggat
ggctatcaatacgaaaagacctttgggccgttggttcgtctagaggcggactatgacaaa
aagttaaaggaatcggccacccaagagaacatcgaagttcgttgggatgtgggtctaaac
aagaaaaccatcgcctacttcactctggccaaaacggattcggatatgaaactgatgcac
ggagatgagcttcgtctacgttacgtgggtgaattgtatcatccgtggagcgagactggc
catgtgattaaggtgcccgataattttggtgacgatgttggcctggaaatgaagacctcc
tcaaatgcccccgttaagtgcaccagtcacttttcagtggattttatttggaaatgcacc
tcgtttgatcgcatggcgcgtgcgctccgtatctttgccatggacagaaactccgtatcg
aactacatctattctcgtcttctcggtcacggacgccccgatggcactgatgaggtactc
tttcgtggaccccagcccaagctgtattcagctccgcatctgcctgaacttaatcgaagt
caagtgtatgccgtcaagcatgccctccaacggccattaagtctaatccagggtccaccg
ggtactggtaagacggtgacatcggcgaccattgtctatcaattggttaaacagcatggc
ggcactgttctcgtgtgtgcccccagtaacacggccgtcgatcagcttacggagaagatt
catcgtaccaatttgaaggtggtacgtgtgtgcgccaagagccgtgaggctatcgactcg
cctgtcagtttcctggccctgcacaatcagataagcaacatcaaggcgaacacggagctg
aaaaagctgcaacagctgaaagacgagacgggagaattgagttccgccgatgagaaacgc
tacagaagtctaaagcgaagcactgaaaaccagctgctcgaggcggcggatgttatttgc
tgcacatgtgttggtgccggcgatggccgtttgtcccgcatcaaattcacgtcgatcctg
atcgatgaatccatgcagtctacggagccggaatgcatggtgcccgtggtgctgggtgcc
aaacaactgatactcgtcggcgatcattgtcaattgggtccggtggtcatgtgcaaaaag
gccgctcgtgccggtctctcgcagagtctcttcgagcgcctggtcgtccttggcatacgg
ccattccgcctggaggtgcaatatcgcatgcacccggagttatcgcaatttccctccaat
ttcttctacgaaggatcactgcaaaatggcgtgtgtgccgaggatcgacgattaaagttg
gatttcccatggccgcagccagagagaccaatgttcttcctggtgacgcagggacaggag
gagatagccggatcgggcacatcgttcctcaatcgaaccgaggcggccaatgtggaaaag
atcacaacacgtttcctgaaggcaggcgtcaagcccgaacagattggcattataacacca
tacgaaggtcaaagggcctatctggtgcagtatatgcagtatcagggtagcctccattcg
cggctttatcaggagattgaaatcgccagtgttgatgccttccagggtcgcgaaaaggac
atcatcatcatgtcgtgtgtacgatccaatgaacggcaaggcatcggtttcctcaacgat
ccgcgacggcttaatgtggcccttacccgtgccaaatatggcatcattattgtgggcaat
ccgaaagtgttgtccaagcagcaactgtggaatcatttacttaatttctacaaagatcgc
aaagtcctggtcgagggctcgctcaacaatctgaaagaatcgatgattcatttccaaaaa
ccgaagaaactggtgaataatctaaatatgggtgcacatttcatgtccaccatgatggcg
gatgccaaggaggttatggtacccggttccatttatgaacgaagcagcaatttcaatcga
cagatgggtccatctcatcagcaacagcttccacaacaacagcagcagaatcatcaaaat
ggaggaggtcccttccaggcgcaatccgccataggtggcggaggcggcggttataatcta
cccaattccaatggggcaaatgccctaatgaataactatcaggcgtcgtctaataacaac
tatgccgcaggagcgcccggtcaatcgaatgccgccacttggctgcatcacgattcaatt
ggttatatttccaatgatcataatgctgccactcttggcaacatgcccgttccggttggc
atgtttatgaacatgagcaatttgccgccgagattctacaatcagcatcagcaggccata
atggcagccaaacagaatcgagccatccaacagcaacagcagcagattaattatgccgca
acaagcggcggcggtgctggtagcggcgggggcaccagtggaggaaacgtatccgcatct
ttgggtagcggaataactactgcagttggtggccacaaagcggccaagggacagaagcaa
ggcaaatctcgtactccagcagcagccggagcggcaaatgcggcggcggcgacgacgacc
accaatatgacttcaccgtttagccaacagccaatggctgccatgtcgctacagatgact
caaccgagcgggtttgctttgtctcagcaacccgaattgtcgcaggacttcggacaaata
tcccaaatggatggattgctctcccaggatgtgtccttcaatgtgcctggcgaacgaagt
ctgaatcaattctcacaaccatattga
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integrated database retrieval system
