Deinococcus wulumuqiensis: DVJ83_03385
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Entry
DVJ83_03385 CDS
T05579
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dwu
Deinococcus wulumuqiensis
Pathway
dwu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dwu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVJ83_03385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dwu03400
]
DVJ83_03385
Enzymes [BR:
dwu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVJ83_03385
DNA repair and recombination proteins [BR:
dwu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVJ83_03385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AXG98363
UniProt:
A0A345IF91
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All DBs
Position
670964..674107
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AA seq
1047 aa
AA seq
DB search
MPSASTPNLTKLLDPAPYGNLLLLPQIARAALFAAYPGPAVLLTTPDRLPSYATAGAFGV
PVSVNPGLRDWETRAEHVVLDVNTALDLFPRTPEDHALSLKVGANYPRESLLSRLEKFGY
ERGEEPGFEIKGDTLELRLAPGVGLPADAEEGVWIRAEFFGDELDTLRQLPVGGVGGEKI
QSFTLEPTNDYLTETRWDATRLELLPGHVFLDSPEFYASALGVLTDTLWPKLAGRAVTSF
GRSPLELPDLHTGLQTLPFYRARLSDLERDIAEWRGSGYRVFILVRHDRTAAYLADKLLN
SQEIPWLGIPRLAPGELGFLRSAGEGGFVIPEHKTVVITEDLIYGFQGGSALRGKKMAGR
PVTDALGLSVGDFLIHPEHGIGQFLGLETRKVLGVTRDYLNIEYRGGSRLSVPIEQLPVL
RRHPGTTDDPPQLSSFDKKDWSKAKEKARKNAEAVAAKLLVQYAARQVTPGNTFAPQPEW
DEQVEKNFAFELTADQVRALKETMRDLEKPNPADRLISGDVGFGKTEVALRAAHRVVGHG
KQVAILVPTTLLAEQHTSTFVERMKGLPVRVEGLSRFTTPAQSRQILADLKAGKVDILIG
THRLLSGDIEFKDLGLIIVDEEHRFGVGQKEKLRQLRGLPEMVDGKLTMQGDEKAVDTLA
LSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPMTVRDAIVSEIERGGKVF
YIHDRVASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLATTIVET
GLDIPEANTILIERSDRLGLAQLYQLRGRVGRRSQTAYAYLFYPPRLTENAQRRLWAIAD
LQDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTELLAEAVARLKGEKVEAAP
SVSIDLPVNARLTPEYFVDADGQPDEGERIATYGRLSDARTLQAISRVERDLRKKYGPPT
PEVQNFIDLAKLRLTALAKRVLGIGETMTQLQITFAYKALDYDAPGLKKFPHKTEVVTFP
PSVKIDKRGIKPDEYARLLIEVLGYFG
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
gtgccttccgcctccacgcccaacctcaccaaattgctcgaccccgcgccctacggcaac
ctgctgctgctcccgcaaatcgcccgcgccgcgctgtttgccgcctaccccggccccgct
gtcctgctgaccacccccgaccgcctgcccagttacgccacggcgggggcgttcggcgtg
ccggtgagcgtcaatccgggcctgcgcgactgggaaacgcgggccgagcatgtggtgctg
gacgtgaacacggcgctggatttgttcccccgcacgcccgaagaccacgccctgagcctg
aaagtcggggcgaactacccgcgtgaaagcctgctctcgcggctggaaaaattcggctac
gagcggggggaagaacccggcttcgaaatcaagggcgacacgctggaattgcgcctcgcg
cccggtgtggggttacccgccgacgcggaagaaggcgtgtggattcgggccgagttcttc
ggtgacgaactggacaccctgcgccagttgcccgtgggcggcgtgggcggcgaaaaaatc
cagagcttcaccctggaacccaccaatgactacctcaccgaaaccaggtgggacgccacg
cggctggagcttttgccggggcacgtctttctggactcgcccgagttctacgcttccgcg
ctgggggtgctgaccgacacgctctggcccaaactcgcggggcgcgccgtcaccagcttc
gggcgttcgccgctggaactccccgacctgcacaccggcctgcaaacgctgcccttttac
cgcgcccgcctctcggatttggagcgcgacatcgccgagtggcgcgggagcggctaccgc
gtctttattctggtgcgccacgaccgcacggcggcgtatctggccgacaaactgctgaat
tcgcaggagattccctggctcggcattccgcgtctggcccccggcgaactgggcttcctg
cgctcggcgggcgagggcggctttgtcattcccgaacacaagacggtggtcatcaccgaa
gacctgatttacgggtttcagggcggcagtgcgctgcgcggcaagaagatggcggggcgg
cctgtcaccgacgcgctgggcctgagcgtgggcgacttcctgattcaccccgaacacggc
atcgggcagtttctgggcctggaaacgcgcaaggtgctgggcgtcacccgcgattacctc
aacatcgagtaccggggcggctcgcgcctgagcgtgcccatcgagcaactgcccgtgctg
cgccgtcaccccggcaccaccgacgacccgccgcaactgtcgagcttcgacaaaaaggac
tggagcaaggccaaggaaaaggcccgcaagaacgccgaagcggtggccgccaaactgctg
gtgcagtacgccgcccggcaggtcacgcccggcaacacctttgccccgcagcccgagtgg
gacgagcaggtcgagaagaacttcgccttcgaactcaccgccgaccaggtgcgggcgctc
aaggaaaccatgcgcgacctcgaaaaacccaaccccgccgaccgcctgatttcgggcgac
gtggggttcggcaaaaccgaagtcgcgctgcgggccgcgcaccgcgtcgtcgggcacggc
aaacaggtcgccattctggtgccgaccacgctgctggccgagcagcacacctccaccttc
gtcgagcgcatgaaggggctgcccgtgcgcgtggagggcttatcgcgctttaccacgccc
gcccagtcccggcagattctggccgacctcaaggcgggcaaagtggacatcctcatcggt
acgcaccgcctgctctcgggcgacatcgaattcaaggatctcggcctgattatcgtggac
gaagaacaccgcttcggcgtgggccagaaggaaaaactgcgccagttgcgcggcctgccc
gagatggtggacggcaaactgaccatgcagggcgacgaaaaggcggtggacacgctggcc
ctgtcggccacgccgattccgcgcacgctgtacatgagcatggtgggcctgcgcgacatg
agcagcatccagacgccgcccaagggccgcaaacccatccagaccatcctcgcgcccttc
gaccccatgaccgtgcgtgacgccatcgtgtcggaaatcgagcgtggcggcaaagtcttt
tacattcacgaccgcgtggcgagcatcggcgcacgcagcctgtacctgcgcaatctggtg
ccggaagcccgcatcggcgtggcgcacgggcgcatgaacgaggaagaactcgaagaaatc
atgctgggcttcgagcagggcgcgttcgacgtgctgctggcgaccaccatcgtcgaaacc
gggttggacattcccgaggccaacaccatcctgatcgagcgcagtgaccgcctgggcctc
gcgcagctttaccagcttcggggccgtgtgggacggcgttcgcagaccgcttacgcctac
ctcttttaccccccacgcctgaccgagaacgcgcagcggcggctgtgggccatcgcggat
ttgcaagacctcggcagcgggcacctgctggccgaaaaggacatggaaattcgcggcgtg
ggcaacatcctgggcgaggagcagcacgggcacgtgcaggccgtgagcatcgatgtgtac
accgagctgctggccgaggctgtcgcccggctcaagggcgagaaggtggaggccgcgccg
agcgtgtccatcgacctgccggtgaacgcccgcctgacgcccgagtactttgtggacgcc
gacgggcagcccgacgagggcgagcgcatcgccacctatggccgcctcagcgacgcccgc
accctccaggccatttcccgcgtcgagcgcgacctgcgcaagaagtacggcccgcccacc
cccgaggtgcagaacttcatcgacctcgccaagctgcggctgacggccctcgccaaacgc
gtgctgggcatcggcgagacgatgacgcaactgcaaatcacctttgcctacaaagcgctg
gactacgacgcgccgggcctgaagaagttcccgcacaagaccgaagtggtgaccttcccg
ccctcggtgaaaatcgacaagcgcggcatcaagcccgatgagtacgcccggctgctgatt
gaggtgctggggtactttgggtga
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