Deinococcus wulumuqiensis: DVJ83_06710
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Entry
DVJ83_06710 CDS
T05579
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dwu
Deinococcus wulumuqiensis
Pathway
dwu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dwu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DVJ83_06710 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dwu03021
]
DVJ83_06710 (rpoD)
Transcription machinery [BR:
dwu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DVJ83_06710 (rpoD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
AA_kinase
ARA70
Motif
Other DBs
NCBI-ProteinID:
AXG98905
UniProt:
A0A345IGT3
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Position
complement(1364979..1366799)
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AA seq
606 aa
AA seq
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MAEPVKARVRPKVKPVADEAPAESKIITPDKPRTRRKVADPATTGAAASAAAPQDSTDTA
QAPAAAKPKAAPKKAPAKKAATKPADAENVDTATVNAADAAPVDAAPPARKKAQSKAAGG
AAEPSKPARKAAPKKAAQDTPAPAEDTEAAPVKKAAAKAAPKTGAGKTAAGKASAAKATP
AKAASAAKPAAAGPADKPYYQHPSIQELLKAGKAAGILASEDIATALAAALEAHGLDPES
TDAFEDMQLFLAGQNIEVQDLDEDEDELEGDDLDSDEAVPGAPQAQQDDDEEKYFDDMPR
AVSNDPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEAKKQLEEDESLDDRARRRLMRQT
EDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKFST
YATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEIAEAMGP
GWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVDNAAKTLLSEELEKA
LGKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLKYHESRTRK
LRDFLD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacctgtcaaagcccgcgttcgtcccaaggtcaagcccgttgccgacgaagca
ccggccgaaagcaagatcatcacccccgacaagccccgcacccgccgcaaggtggcagac
cccgccaccacgggagccgctgcctctgccgccgctccccaggacagcaccgacaccgcg
caggcgccggccgccgccaagcccaaggccgcgcccaagaaggcacctgccaaaaaagcg
gcgaccaagcctgccgacgccgagaacgtggacacggcaaccgtaaatgccgcagacgcc
gcacctgtggacgcggcgcccccggcccgcaagaaggcccagagcaaagccgcaggcggc
gctgccgaacccagcaaacctgcccgcaaggccgcccccaagaaggcggcgcaggacact
ccggctcccgccgaggacaccgaagctgctccggtcaagaaggcagcggccaaggcagcg
cctaaaacgggtgcgggcaaaacggctgcgggcaaggcgagcgccgccaaggccaccccg
gcgaaggcggcgagcgcggccaaacccgcggcggcggggcctgccgacaagccctactac
cagcaccccagcattcaggaactgctcaaggcaggcaaggcggcgggcatcctggcgagc
gaggacatcgccacggcgctggcggcggccctcgaagcgcatggtctggaccccgagagc
accgacgccttcgaggacatgcagcttttcctcgccgggcagaacatcgaggtgcaggac
ctcgacgaggacgaggacgaactcgaaggggacgacctcgacagcgacgaggcggtgccc
ggagcgcctcaggcccagcaggacgacgacgaggaaaagtacttcgacgacatgccccgc
gccgtcagcaacgacccggtgcgccagtacctccacgaaatcgggcgcgtctcgctgctg
accctggaagaagaaatcgcgctcgcccgccgcatcgaggaaggcgaggaggccaagaag
cagctcgaggaagacgagtcgctcgacgaccgcgcccgccgccgcctgatgcgccagacc
gaggatggcgccgccgcccgtcagggactgatcgaggccaacctgcgtctggtggtgtcc
atcgccaaaaagtacaccgggcgcgggctgggctttctcgacctgattcaggaaggcaac
cagggcctgattcgcgccgtcgagaagttcgagtaccgccgccgctacaagttttccacc
tacgcgacgtggtggattcgtcaggccatcaaccgcgccatcgccgaccaggcccgcacc
atccgcattccggtgcacatggtcgagaccatcaacaagctgacccgcacggcccgtcaa
ttgcagcaggaactctcgcgcgaagccacgcacgaggaaattgccgaggcgatggggccg
ggctgggacgccgccaaagtcgaagaagtccagaaggtcagccaggaacccgtctcgctc
gaaacgccgattggcgacgagaaggactccttctacggcgacttcatccctgacgagaac
ctcgattccccggtggacaacgccgccaagacgctgctttccgaggaactcgaaaaggcg
ctgggcaagctcaccgagcgcgaggcgatggtcctgaaattccgcaagggcctcgtagac
gggcgcgagcacaccctcgaagaagtgggccagcgcttcagcgtgacccgcgagcgcatc
cgccagatcgagaacaaggcgctgcgcaagctcaagtaccacgagagccgcacccgcaaa
ctgcgtgacttcctcgactga
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