Deinococcus wulumuqiensis: DVJ83_06730
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Entry
DVJ83_06730 CDS
T05579
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dwu
Deinococcus wulumuqiensis
Pathway
dwu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dwu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DVJ83_06730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dwu03021
]
DVJ83_06730 (rpoC)
03400 DNA repair and recombination proteins [BR:
dwu03400
]
DVJ83_06730 (rpoC)
Enzymes [BR:
dwu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DVJ83_06730 (rpoC)
Transcription machinery [BR:
dwu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DVJ83_06730 (rpoC)
DNA repair and recombination proteins [BR:
dwu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DVJ83_06730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
DUF244
Motif
Other DBs
NCBI-ProteinID:
AXG98907
UniProt:
A0A345IGT5
LinkDB
All DBs
Position
1372046..1376689
Genome browser
AA seq
1547 aa
AA seq
DB search
MKDFNKVRIAIASPEKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDSPSKIGTLLDLSAG
QLEKVLYFSSFIVTKPFNAQKDGRPLKRGELLSDDEYRELRFGRQETYTIPNSVEDVDIR
DGEYVTRGQTLGGNVVSKMDGLAQYRFPRRAVIAYAEGVEASLPLPVDALVQQETFRAGE
ILAELEEDVQLTAPVAGTVFMHEMGEDSVMVELREGVEASDTDEEGADADPAQGEVLARV
YVPHGMNVQVAEGEIVEAGAVLAEAAAGVRLRVSRDSNLSGVTFPKKKGDVTVTAHWTRR
VEYPIDPTMHVLVGDGSEVAKGQRVIGAIDKEEEVIAEADGVITLHQPASILVSKAKVYA
YDDEPLVVNGDRVEPGDELADDGNLRSEISGRIELDLVRKQVRVIESYDFEAKMGAEAVK
ELLDELNLDELEAELNEQMKDNSRHKRAKARKRLEVTRSFKASGNNPSWMILGTVPVMPP
DLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLMSQGAPDMIIRNEKRMLQEAVDALI
DNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLRLHQC
GVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLL
NRAPTLHRLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQ
MLASHNLLSPANGEPNVKPSRDIILGIFTLTQLRRDNLGAGTEYASEADVLAAYDEGKLM
LNSPVLVNGQETSPGRLRYTFSNPDEALHAVEQGEIDHQDHVRIRLGGQVYETSAGRVQF
RRMVQEALGTQAHLVDTLVDLETTYEKDALKDMVMACFKHLGIEATAGLLDALKDGGFKL
STTSGITIGIDDIVLPPNKPELLAEADQMLAEIEQNFEFGFMTEEERYKQVVQLWNNTTD
AVKDAVFENFSKNYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIRASF
REGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGSTDSTVMP
LGATDERTGEWRSRKGSEIETSIYGRTLTADVELSDGRVIPEGEMLSMEDVKAIAKDAKH
IGEVFVRTPLNCRVKAGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFH
TGGIAGGGDITMGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEQYS
SKTATKIGKALRMVVKDGEHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRS
QGVKVHDKHIEVIVRQMLRWVEVTDGGDTTLLEGQTVERWEVDAANDALQDGQTPASWKP
VLLGITKSSLTTKSWLSAASFQHTTHVLTEASMKGQVDDLIGLKENVILGKLIPAGTGLQ
TVREMQVADERTLEKYGEGSTSSDAVTGTQRYDDTRPGSSINPGYGD
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttcaacaaagtacgcatcgccatcgccagcccggagaaaatccgcgagtgg
agctttggcgaggtcgaaaagcccgaaaccatcaactaccgcaccctgaagcccgagcgc
gaaggtctcttcgacgagcgcatcttcgggccgatcaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgagggcaaggtctgtgagcgctgcggcgtcgaagtgacg
agctccaaggtccggcgctaccgcatgggccacatcgacctggcgacccccgccgcgcac
atctggtacgtcaaggacagccccagcaagatcggcaccctgctcgacctcagcgccggg
cagctcgaaaaggtgctgtatttctcctccttcatcgtgaccaagccgttcaacgcgcag
aaggacggacggcccctcaagcgcggcgaactgctcagcgacgacgagtaccgcgaactg
cgcttcgggcggcaggaaacctacaccatcccgaacagtgtcgaggacgtggacatccgt
gacggcgagtacgtgacgcgcggccagacgctgggcggcaacgtggtctccaagatggac
ggtctggcgcagtaccgtttcccccgccgcgccgtcatcgcctacgccgagggtgtggaa
gccagcctgccgctcccggtggacgcgctggtgcagcaggaaactttccgtgccggtgaa
atcctggcggagctggaagaagacgtgcagctcaccgcgcccgtggcaggcaccgtgttc
atgcacgagatgggcgaagactcggtgatggttgagctgcgcgaaggcgtggaagcgagc
gacaccgacgaagaaggcgccgacgccgaccccgcccagggcgaagtgctggcccgcgtg
tacgtgccgcacggcatgaacgtgcaggtggccgaaggtgaaatcgtggaagcgggcgcg
gtgctggccgaagccgcagcgggcgtacgcctgcgcgtgagccgcgacagcaacctcagc
ggcgtcaccttccccaagaaaaagggcgacgtgaccgtcaccgcgcactggacgcgccgg
gtggaataccccatcgaccccaccatgcacgtcctcgtcggggacggcagcgaagtggcg
aagggccagcgcgtgatcggcgccatcgacaaggaagaggaagtcatcgccgaggccgac
ggcgtcatcaccctgcaccagcccgccagcattctggtgagcaaggccaaggtctacgcc
tacgacgacgagccgctggtggtcaacggtgaccgcgtggagccgggcgacgaactcgcc
gacgacggcaatctgcgctcggaaatctcgggccgcatcgaactcgacctcgtgcgcaag
caggtgcgcgtcatcgagtcctacgacttcgaagccaagatgggggccgaagccgtcaag
gaactgctcgacgaactcaacctcgacgaactcgaagccgagctgaacgagcagatgaag
gacaacagccgtcacaagcgtgccaaagcccgcaaacggctggaagtcacccgttccttc
aaggcgagcggcaacaacccctcgtggatgattctcggcaccgtgccggtgatgccaccc
gacctgcgcccgatggtgcaggtggacggcgggcgctttgccacctctgacctcaacgac
ctgtaccgccgcctgatcaaccgcaacaaccgcctcaagaagctgatgagccagggtgcg
cccgacatgatcatccgcaacgaaaagcgcatgttgcaggaagcggtggacgccctgatc
gacaacggtcgccggggcagccccgtgaccaaccccggctcggaccgcagcctgcgcagc
ctgaccgacctgctcggcggcaagcagggccgtttccgccagaacctgctgggcaagcgc
gtggactactcgggccgctcggtcatcgtggtcggcccgcagctgaggctgcaccagtgc
ggtgtgcccaagcgcatggcgctcgaactcttcaagccgttcctgttcaaggtgctcgaa
gaaaagggcgaagtcaccaacatcaagcaggcccgcaagatgctggagcgttaccgcgac
acccgcgacagcgtgtgggacgccctcgaagaagtgattgaagacaaggtcgtgctgctc
aaccgcgcgcccacgctgcaccgtctgggcatccaggcgttcgagccggtgctggtcgaa
ggtcagtccatccagctgcacccgctggtctgtgaagccttcaacgccgacttcgacggc
gaccagatggcgattcacgtgccgctctcggcccaggcgcaggccgaagcccgcattcag
atgctggcctcgcacaacctgctctcccccgccaacggcgagccgaacgtcaagcccagc
cgtgacatcatcctgggcatcttcaccctgacccagctgcgccgcgacaacctcggcgcg
ggcaccgagtacgcctcggaagccgacgtgctggctgcctacgacgaaggcaagctgatg
ctcaacagccccgtcctggtcaacggccaggaaaccagccccggtcgcctgcgctacacc
ttctccaaccccgacgaggcgctgcacgccgtcgagcagggcgaaatcgaccatcaggac
cacgtgcgcatccgcctgggcggtcaggtgtacgaaaccagcgcgggccgcgtgcagttc
cgccgcatggtgcaagaagccctcggcacccaggcgcacctcgtggacacgctggtggac
ctcgaaaccacctacgagaaggacgccctcaaggacatggtcatggcctgcttcaagcac
ctcggcatcgaggcgaccgccgggctgcttgacgcgctcaaggacggcggcttcaagctc
tcgaccacctcgggcatcaccatcggcatcgacgacatcgtgctgccgcccaacaagccc
gagctgctggccgaggccgaccagatgctcgccgaaatcgagcagaacttcgagttcggc
ttcatgaccgaagaagagcgttacaagcaggtcgtgcagctgtggaacaacaccaccgac
gccgtgaaggacgccgtgttcgagaacttcagcaagaactaccccttcaacccgctgtgg
atcatgagccagtcgggagcacgtggcaacccgcagcagattcgtcagctcgccgggatg
cgcggcctgatggcccgcccggacggctcgaccatcgaagtgccgattcgcgcctccttc
cgcgaaggtctgaccgtgctggagtacttcatctcgacccacggggcgcgtaagggcggg
gccgacaccgcgctgcgtaccgccgactccggttacctcacccgcaagctggtggacgtg
gcccacgaagtcgtcgtgcgcgacgtggactgtggcagcaccgactccaccgtgatgccc
ttgggcgcgaccgacgagcgcaccggcgaatggcgcagccgtaagggcagcgaaatcgaa
accagcatctatggccgcaccctgaccgccgacgtggaactctcggacggccgcgtgatt
cccgagggcgaaatgctctcgatggaagacgtcaaggcgattgccaaggacgccaagcac
atcggcgaagtgtttgtccgcacgccgctgaactgccgcgtgaaggcgggcgtgtgccag
aagtgctacggctacgacctctcgcaggccaagcccgtcagcatgggcgaagccgtgggc
gtggtggccgccgagtccatcggcgaacccggcacgcagctcaccatgcggaccttccac
accggcggcatcgcgggcggcggcgacatcaccatgggtctgccccgcgtgatcgagctg
ttcgaagcgcgcaagcccaagacccaggccgtggtcgccgaccgtgacggcgtggtgcgc
atcgaggaagaggaagagcgttacctcgtccgtatcgaggccgaggacgagcagtactcc
tccaagaccgccaccaagatcggcaaggcgctgcgcatggtcgtcaaggatggcgagcac
gtcgaagccggtcagccgctcacgcgcggcgcgatcaacccccacgacctgctgctgtac
aaggacaccgacgccgcgcagcgttacctggtggaagaagtgcagcgcgtgtaccgctcg
cagggcgtgaaggtccacgacaagcacatcgaagtcatcgtgcgccagatgctgcgctgg
gtcgaagtgaccgacggcggcgacaccacgctgctcgaaggccagaccgtcgagcgctgg
gaagtggacgcggccaacgacgcgctgcaggacggccagacccccgcgagctggaagccg
gtgctgctcggcatcaccaagagcagcctgaccaccaagtcgtggctgtccgccgcctcc
ttccagcacaccacccacgtgctgaccgaagcctccatgaagggccaggtggacgacctg
atcggcctgaaggaaaacgtcatcctcggcaagctgatcccggcgggcacgggcctccag
accgtccgcgaaatgcaggtggccgacgagcgcacgctggaaaaatacggcgaaggcagc
accagctccgacgccgtgaccggaacccagcggtacgacgacacccgccccggcagcagc
atcaaccccggctacggcgactga
DBGET
integrated database retrieval system
