Deinococcus wulumuqiensis: DVJ83_16610
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Entry
DVJ83_16610 CDS
T05579
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dwu
Deinococcus wulumuqiensis
Pathway
dwu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dwu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVJ83_16610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dwu03019
]
DVJ83_16610
03400 DNA repair and recombination proteins [BR:
dwu03400
]
DVJ83_16610
Enzymes [BR:
dwu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVJ83_16610
Messenger RNA biogenesis [BR:
dwu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVJ83_16610
DNA repair and recombination proteins [BR:
dwu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DVJ83_16610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Zn_Ribbon_TF
FtrD-like
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXH00760
UniProt:
A0A345IM37
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All DBs
Position
pDrdI:260395..263886
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AA seq
1163 aa
AA seq
DB search
MSHEREAALFAYKVGWEPKGWLPDRPWVGVQTHLRHALFALAQREGLEIVTTSAEHGLSY
HLPPDLGRRLQPWSEADYQSLGELHPLSPNTRMTLQRLGLAFLERVLPASGAVQPVPDEP
IKWLVQGQVVTLSEEELLAPRLPRSVQVQLKKTGQPLRPKPAAWEYWLTLAPLQLRLWGM
AWLSRLEQAMQAGQRHLRIKLLEDHPLPLLALWDSLELLEAVRRLYTLRWDIPKVTVQLP
AGAERCHAALDAYLGRNLQHEGRKALLDIRLAAVDRADVAVGSLDWLEEGDVHWSEEDVY
AAGVKLQRRLDLPFQEYEVAAAEREVLDFMFARFFAHARLRDEQYAAIRRVLEGDALLVL
LPTGYGKSVIYQMVGLMQPGVALIVSPLNALIKDQIAHLRQDGIIGAGFVVGSGSQATRE
YGYFEEGRYRLFYCSPERFETDAFKRSVAQLIEQRRIALVAVDEAHCVSEWGHDFRPAYM
HVRSMRKKLQQDTAHPIPLLALTATASPVVRADIQRALGIAEGNVIQSRSSDRPELSFSV
HAADGRGGRQARLRALDQVFSEVAPALFGQDVLHAKDDEGHYLNGAVVFTPYADRRDEAL
FGSGTSVVREHLARGVLAHEPVGMYAGSAPGACPQCGSHNFYRHYGEYRCNACGFVFLKQ
QIGRDEDWDETVLRTQDDFLSSRMPVLVSTKGFGMGIDKQNIRLVTHYVMSGSLEAYYQE
AGRAGRSGEHAHVALVTVPPAEACARQHIDQLTTLAPEDDLPFPCLKRNAKGFPKLKCDY
GLTELCDIAQQALFIQENFPSAAQDLGDLVKVFEALMGTQNSVISPPAEMNEGRTQRALS
RLATLSVVRTYVKPGKNFKVNFNREWTAAAALSELSKELRGFDQLTGAPSQTPPELQALL
DTPDLKVSEYVHRAGKLLIDTLYSSVRSMRVYSLVNLYRFASLPPRQCRRVHLRRSFEVT
PLQADYQCGFCDTCQPDLQFERPQAYTPVVLSHEEELGVRFEAQLEQFDIEQASALLREC
EAAGVTASLLIRSNYLLEQRPNDLGLLFMNVALHALEGQAEQGQRTAQRAVQVMRRAGYS
GRDVSPYLAGLDAFVPQLSRTLYASVGGPFDDPAGRRLATESLRLTDAELARELERRWVL
ASLNDHAAQLVPQIPFTTVLENA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacgaacgcgaagcggccctgttcgcttataaggtcggctgggagcccaaaggc
tggctgccggaccgtccctgggttggcgttcagacgcatttacggcacgccctgttcgct
ctggcccagcgagaaggcctggagatcgtgacgacttcggctgagcatggcctgtcgtat
cacttgccgccggatctcggccgcagacttcagccctggagtgaagcggattatcagtct
ctgggagagctgcaccctttatcaccgaacacccgcatgaccttgcaaaggctggggctg
gctttcctggaacgcgtgttaccggcgtcaggggccgtgcagccggtgccggacgagccg
atcaagtggctggtgcagggtcaagtggtgacgctcagtgaagaagagctcctcgcgccg
cgcttgccgcgcagcgtgcaggtgcaactcaagaagaccggtcagccgctgcggccaaag
ccagcggcctgggaatactggctgacgctcgcacccttgcagctccggctgtggggcatg
gcctggctcagccgccttgagcaggcgatgcaagctgggcagcggcacctgcgcatcaaa
cttcttgaggatcaccctttgccgctgctggccctctgggactccctcgagttgctggaa
gccgtgcggcgcctgtataccttgcgctgggatattcccaaggtcacggttcaactccct
gcaggcgctgagcgctgccacgccgccttggacgcttatctggggcgcaacctgcagcat
gaagggcgaaaggcacttttagacatccgcctcgccgcagtcgaccgggcggatgtcgcc
gttggctcgctcgactggttggaggaaggggacgtccactggtctgaagaagacgtttac
gctgcgggtgtcaagctgcagcgccgtctagatttgcccttccaggagtacgaggtggca
gccgcggagcgtgaggtgctggatttcatgttcgcgcgctttttcgctcatgcccgcctg
agagacgagcagtatgccgccattcggcgggtgctggaaggtgacgccctgctggtgctg
ctcccgaccggctacgggaagagcgtgatctaccagatggtgggcctgatgcagccgggc
gtcgcactgatcgtcagccccctaaatgcactgatcaaggatcagattgcacacttgcgg
caagacggcatcatcggcgcagggttcgtggtggggagtggaagtcaggcgacccgtgag
tacgggtatttcgaagagggacgctaccggctgttctactgctctcctgaacgcttcgaa
acggacgctttcaaacggtccgtggcgcaattgatcgagcagcgccggattgcccttgtg
gccgtggacgaagcccactgcgtctccgagtggggacatgacttcaggccggcttacatg
cacgtcaggagcatgcgtaagaagctgcagcaggacacggctcatcccatcccgctgctg
gcgctgactgcgacggcttcaccggtagtccgggccgatatccagcgggcgctggggatc
gcagaaggcaacgtcattcagtcacgctcaagtgaccgcccagaactcagcttcagcgtg
catgccgccgatggccgcgggggtcgtcaggcgaggctgcgagcgttggaccaggtgttt
agcgaagtcgctccggccctctttggtcaggacgtgctgcatgccaaggatgacgagggc
cattacctgaacggtgcggtggtatttaccccgtatgcagatcggcgggacgaggccctt
ttcggaagtggcacttccgtcgttcgggagcacctggcacggggggtactggcgcatgaa
ccggtcggaatgtatgccggcagcgccccaggtgcctgtccacagtgcggcagtcacaac
ttctaccgtcattatggcgaataccgctgcaacgcctgtggtttcgtcttcctaaagcag
cagattggccgcgatgaagactgggacgaaaccgtcttacgcacgcaagacgatttcctg
tccagccgcatgcctgtgctggtgtcgaccaagggctttggcatggggatcgacaagcag
aatatccgcctcgtgacgcattacgtgatgtccggcagtctggaagcgtattaccaggag
gctggacgcgcgggacgcagtggggagcacgcgcacgtggccctcgtgaccgttcccccc
gctgaggcgtgtgcacgtcagcatatcgaccagctcaccacacttgcccccgaggacgac
ctcccttttccttgtttgaaacgcaacgccaagggcttcccaaaattaaagtgcgattat
ggcttaacagaactatgcgatatcgcccagcaagccctgttcattcaggagaatttcccg
tctgccgctcaggatctcggcgacctcgtcaaggtatttgaggctttgatgggcacacaa
aactcagtcatcagtccgcccgcggaaatgaacgaagggaggacgcagcgggcactttct
agactcgcgaccctgtccgtggtgcggacttacgtcaagcccggcaagaacttcaaggtg
aatttcaaccgcgagtggacagcagctgcggcgctgagtgaactgagcaaagagttgcgg
gggtttgaccagttgaccggcgcacccagtcagacgccacccgaactgcaggctctgctg
gacacgcctgacttgaaggtatctgagtacgtgcatagggcggggaagctgctgattgat
acgttgtattccagcgtgcggtccatgcgggtgtacagcctcgtgaacctttaccggttc
gcgtccttgccccccaggcaatgccgccgcgttcaccttcgccggagtttcgaggtcacg
ccgctgcaagcggactatcaatgcggcttttgcgacacttgccagcctgacctgcagttt
gaaaggcctcaggcgtacacgcctgtggtcctgagtcacgaagaagagctcggtgtgcgc
ttcgaagcgcagctagaacagttcgacatagagcaggcgagtgccctcttgcgggagtgc
gaggcagcaggcgtgacggcttcattgctgatccgctcgaactatctcctggagcagcgg
ccgaatgatctggggctgctgttcatgaacgtggcgcttcatgccctcgaaggtcaagcg
gagcaggggcagcgcaccgctcagcgggccgtgcaggtcatgcggcgcgccgggtactcc
gggcgtgacgtctccccgtacctggcgggtttagacgctttcgttccacagctcagccgc
accttgtacgccagcgtaggtgggcctttcgatgatccggcggggcgacgcctggccacc
gagtcactcaggctcacggacgccgaactggcgcgggagcttgagaggcgttgggtgctg
gccagcttgaatgatcacgcggcgcaattggtccctcaaattcctttcacgaccgtactg
gagaacgcatga
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