KEGG   Drosophila yakuba: Dyak_GE12310
Entry
Dyak_GE12310      CDS       T01068                                 
Name
(GenBank) uncharacterized protein
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
dya  Drosophila yakuba
Pathway
dya03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dya00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Dyak_GE12310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dya03021]
    Dyak_GE12310
   03019 Messenger RNA biogenesis [BR:dya03019]
    Dyak_GE12310
Transcription machinery [BR:dya03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Dyak_GE12310
Messenger RNA biogenesis [BR:dya03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     Dyak_GE12310
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_WDR35_2nd
Other DBs
NCBI-ProteinID: EDW91032
UniProt: B4P767
LinkDB
Position
2R
AA seq 1455 aa
MFSMCKQTHAATAVEFSIACRFFNNLEENLVVAGANVLKVYRIAPNVEAGQRQKLNPSEM
RLAPKMRLECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTL
SLHYFEEDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADV
KPIKKAPTAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPG
RIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYL
NQSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRTGDLYVLTL
CVDSMRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDD
VEQQTEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGTGAKASVLQLR
KFIFEVCDSLMNVAPINYMCAGERVEFEEDGATLRPHAESLQDLKIELVAATGHSKNGAL
SVFVNCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLSQRNSTLVLQTGQEI
NEIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNVPIDVGSPVVQVSIA
DPYVCLRVLNGQVITLALRETRGTPRLAINKHTISSSPAVVAISAYKDLSGLFTVKGDDI
NLTGSSNSGFGHSFGGYMKAEPNMKVEDEEDLLYGDAGNAFKMNSMADLAKQSKQKNSDW
WRRLLVQAKPSYWLIVARQSGTLEIYSMPDMKLVYLVNDVGNGAMVLTDAMEFVPISLTT
QENSKAGIVQACMPQHANSPLPLELSVIGLGLNGERPLLLVRTRVELLIYQVFRYPKGHL
KIRFRKLDQLNLLDQQPTHIELDENDAQEEIESYQMQPKYVQKLRPFANVGGLSGVMVCG
VNPCFVFLTFRGELRIHRLLGNGDVRSFAAFNNVNIPNGFLYFDTTYELKISVLPSYLSY
DSTWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGEDKELSEESRGERFI
YPIGSQFEMVLISPETWEIVPDASISFEPWEHVTAFKIVKLSYEGTRSGLKEYLCIGTNF
NYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLG
QKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISLLRFQEEYRTLSLAS
RDFNPLEVYGIEFMVDNSNLGFLVTDAERNLIVYMYQPEARESLGGQKLLRKADYHLGQV
VNTMFRVQCHQKGLHQRQPFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLS
YQEHLCGLNPKEYRTLKSFKKQGINPSRCVIDGDLIWSYRLMANSERNEVAKKIGTRTEE
ILADLLEIERLASVF
NT seq 4368 nt   +upstreamnt  +downstreamnt
atgttttcgatgtgcaagcagacgcacgccgccacggcggtggagttttcgatagcgtgc
cgcttcttcaacaatctggaggagaacctggtggtggcgggcgccaatgtgctgaaggtg
taccggatagcgcccaacgtggaggcgggccagcgtcaaaagttgaatcccagcgagatg
cgtctggcgcccaaaatgcgactggagtgcctagccacatatactctctacggcaatgtg
atgtcgctgcagtgcgtctcactggcgggagccatgcgggatgcgctgctgatcagtttc
aaggacgcaaaattgtccgtactgcagcacgatccggatacatttgccctgaaaaccctc
tcacttcactatttcgaggaagatgacatacgtggcggctggacgggtcgctattttgtg
ccaacagttcgcgtggatcccgattctaggtgtgccgtcatgttggtctacggcaaacgg
ctggtagtcctgccctttcgcaaggacaacagtctagacgaaatcgagctcgcggacgtg
aagccaattaagaaggccccgacggcaatggtcagcaggacgcctattatggcatcttat
ctgatagcgctgcgagatctagatgagaagatcgacaatgttctggacatacaattcctg
cacggctactatgaaccaacgctgcttatactctacgagccggtgcgcacctgtcccgga
agaataaaggtgcggtccgatacctgtgttttggtggccatctcgttgaacattcagcaa
cgagtgcatccaattatttggaccgtcaacagtctaccttttgactgtctacaggtttac
ccgattcagaagcccattggtggttgtctggtgatgacagttaacgctgtaatctacctc
aatcagagtgttcctccatatggcgtcagtttaaacagctcagcagacaatagcactgca
tttccactgaagcctcaggatggcgttcggatcagtttggattgtgccaactttgctttt
attgatgtcgacaagctggtaatctcgcttcgcactggagatctatacgtgctcacgctt
tgcgttgactcaatgagaacggttaggaacttccatttccacaaagcagccgccagtgtg
ctaactagttgtatctgcgttctgcactccgaatacatatttttgggatcacgtctcgga
aactccctattgctgcactttaccgaagaggatcagagcacggtcattacattggatgat
gtggaacagcaaacggagcagcagcaaaggaatttgcaggacgaggatcagaatttggag
gaaatttttgatgtagatcaattggaaatggcacccactcaagcaaaatcgcgtcgcatc
gaggatgaggaactagaggtgtatggtactggagctaaggcatcggttcttcaactgcga
aagttcatttttgaggtgtgcgacagtcttatgaacgtagcaccaatcaactacatgtgc
gccggtgaaagagtggaattcgaagaggatggggctacgttgcgaccacatgcagaatct
ctgcaagatctaaaaatagagctagtcgctgccaccggtcacagcaaaaacggagctctg
tccgtatttgtgaattgcattaatcctcaaatcattacgagctttgagttagacgggtgc
cttgatgtgtggactgtgtttgatgatgccactaaaaagtcgtcgcgaaacgatcagcat
gatttcatgctgctttcacaaaggaattctactttggttctgcaaacaggacaggaaatt
aatgagatcgagaacacgggttttacggttaaccagccgaccatatttgtcggtaatctc
ggacagcaacggttcattgttcaggtcaccacccggcatgtcagattattgcaaggaact
cggttaatccaaaatgtgcccattgatgtgggctcgccagtggtacaggtgtctatagca
gatccgtatgtttgcctgcgagtgttaaatggtcaggttatcacattggcgctgcgagaa
acacgtggaactcctcgtttagctatcaacaagcataccattagcagctctcccgccgtt
gttgccatttcggcgtacaaagatttatcaggactattcacggtaaaaggtgatgatata
aatctgacgggcagctcaaacagtggatttggacatagttttggtggctacatgaaggca
gagccgaacatgaaggtggaggatgaagaagatcttctctacggcgacgccggaaatgct
ttcaagatgaacagcatggcggatttggcgaaacagtcgaaacaaaagaactcggactgg
tggcgacgtctgcttgtgcaagcaaagcccagctattggttaattgttgcccgccagagt
ggcaccttggagatctactctatgccggacatgaagcttgtgtatctcgtgaatgatgtg
ggcaatggtgctatggttcttacggatgcaatggaattcgtgcccatttcactgactacg
caggagaactcgaaggcgggtattgttcaggcttgtatgccgcagcatgctaactcccca
ctgccattggaattgagtgtaatagggttgggtctaaatggagaaagacctttattattg
gtcaggactcgagtagagctccttatataccaggtgttccgatatcccaagggccatctg
aagatacgtttccgaaagctggatcaactgaatttgctggaccaacagccgacgcatatc
gaattagatgagaacgacgcacaggaggagatagaatcttatcaaatgcaaccaaagtat
gtccaaaagcttcgaccattcgccaacgttggaggactctccggcgttatggtatgtggt
gtcaatccttgctttgtgtttctaacattccgaggagaacttcgcatacatcggctgctc
ggtaacggagatgtgcgtagctttgcagcctttaacaatgttaatattccgaatggattc
ctttactttgacaccacctatgagcttaagatctccgtgttacccagctacttgagttat
gactccacttggccggtgagaaaggttcctctcagatgtacaccaagacaacttgtttac
catcgcgagaatcgggtttactgcctaatcacgcaaacagaggaaccgatgaccaagtac
tatcgctttaacggagaggataaggagctgtccgaggaaagccgtggcgagagattcatc
taccccattggctcgcaattcgaaatggtattaatttctccagaaacctgggaaattgtg
ccagatgcatcaatttcgtttgagccctgggagcacgtcactgcttttaagatcgttaag
ttgtcctacgaaggtacaagatcaggacttaaggaatacctttgcattggaaccaacttc
aattacagcgaggatattaccagcagaggaaatattcatatttatgatattattgaagtg
gttcccgaacccggaaagccgatgaccaaattcaagataaaggaaatatttaagaaggag
cagaagggaccagtttctgccatttcagatgttttgggttttttggtcactggtcttggt
cagaagatctatatttggcagcttcgcgatggagaccttattggagtggcttttatagat
acaaatatctatgtccaccagattatcaccgtgaaatccctgatttttattgcggatgtt
tacaagtctattagtttactgcgcttccaggaggagtatcgcacattgtcgttggcctcg
cgagattttaatccgctggaggtttatggaattgaattcatggtggacaactccaatctg
ggtttcctggtgaccgatgccgagcgcaatttaattgtgtacatgtaccaaccggaggcc
agggaatcactgggtggccagaagctgctacgcaaggcggattatcacctgggtcaggtg
gtaaacaccatgtttcgagtgcagtgccatcaaaaaggattgcaccagcgccaacccttc
ctatacgaaaacaagcatttcgtagtttatggaaccctggatggagctctgggatattgc
ttgccccttcccgagaaagtttacaggagattcctgatgttgcagaacgttctcctctcc
taccaggaacacctttgcgggctcaatcccaaggaataccgcactctcaagtctttcaag
aaacaaggcatcaatccgtctcgttgcgtcattgacggagatttaatttggtcatatcgc
ctaatggccaattcggaacgcaatgaagtggcgaagaagattggcacgcggactgaagaa
atcctagccgatttgctggagatcgaacgactcgccagcgttttttag

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