Drosophila yakuba: Dyak_GE12310
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Entry
Dyak_GE12310 CDS
T01068
Name
(GenBank) uncharacterized protein
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
dya
Drosophila yakuba
Pathway
dya03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dya00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Dyak_GE12310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dya03021
]
Dyak_GE12310
03019 Messenger RNA biogenesis [BR:
dya03019
]
Dyak_GE12310
Transcription machinery [BR:
dya03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Dyak_GE12310
Messenger RNA biogenesis [BR:
dya03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Dyak_GE12310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-ProteinID:
EDW91032
UniProt:
B4P767
LinkDB
All DBs
Position
2R
Genome browser
AA seq
1455 aa
AA seq
DB search
MFSMCKQTHAATAVEFSIACRFFNNLEENLVVAGANVLKVYRIAPNVEAGQRQKLNPSEM
RLAPKMRLECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTL
SLHYFEEDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADV
KPIKKAPTAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPG
RIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYL
NQSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRTGDLYVLTL
CVDSMRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDD
VEQQTEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGTGAKASVLQLR
KFIFEVCDSLMNVAPINYMCAGERVEFEEDGATLRPHAESLQDLKIELVAATGHSKNGAL
SVFVNCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLSQRNSTLVLQTGQEI
NEIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNVPIDVGSPVVQVSIA
DPYVCLRVLNGQVITLALRETRGTPRLAINKHTISSSPAVVAISAYKDLSGLFTVKGDDI
NLTGSSNSGFGHSFGGYMKAEPNMKVEDEEDLLYGDAGNAFKMNSMADLAKQSKQKNSDW
WRRLLVQAKPSYWLIVARQSGTLEIYSMPDMKLVYLVNDVGNGAMVLTDAMEFVPISLTT
QENSKAGIVQACMPQHANSPLPLELSVIGLGLNGERPLLLVRTRVELLIYQVFRYPKGHL
KIRFRKLDQLNLLDQQPTHIELDENDAQEEIESYQMQPKYVQKLRPFANVGGLSGVMVCG
VNPCFVFLTFRGELRIHRLLGNGDVRSFAAFNNVNIPNGFLYFDTTYELKISVLPSYLSY
DSTWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGEDKELSEESRGERFI
YPIGSQFEMVLISPETWEIVPDASISFEPWEHVTAFKIVKLSYEGTRSGLKEYLCIGTNF
NYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEIFKKEQKGPVSAISDVLGFLVTGLG
QKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISLLRFQEEYRTLSLAS
RDFNPLEVYGIEFMVDNSNLGFLVTDAERNLIVYMYQPEARESLGGQKLLRKADYHLGQV
VNTMFRVQCHQKGLHQRQPFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLS
YQEHLCGLNPKEYRTLKSFKKQGINPSRCVIDGDLIWSYRLMANSERNEVAKKIGTRTEE
ILADLLEIERLASVF
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgatgtgcaagcagacgcacgccgccacggcggtggagttttcgatagcgtgc
cgcttcttcaacaatctggaggagaacctggtggtggcgggcgccaatgtgctgaaggtg
taccggatagcgcccaacgtggaggcgggccagcgtcaaaagttgaatcccagcgagatg
cgtctggcgcccaaaatgcgactggagtgcctagccacatatactctctacggcaatgtg
atgtcgctgcagtgcgtctcactggcgggagccatgcgggatgcgctgctgatcagtttc
aaggacgcaaaattgtccgtactgcagcacgatccggatacatttgccctgaaaaccctc
tcacttcactatttcgaggaagatgacatacgtggcggctggacgggtcgctattttgtg
ccaacagttcgcgtggatcccgattctaggtgtgccgtcatgttggtctacggcaaacgg
ctggtagtcctgccctttcgcaaggacaacagtctagacgaaatcgagctcgcggacgtg
aagccaattaagaaggccccgacggcaatggtcagcaggacgcctattatggcatcttat
ctgatagcgctgcgagatctagatgagaagatcgacaatgttctggacatacaattcctg
cacggctactatgaaccaacgctgcttatactctacgagccggtgcgcacctgtcccgga
agaataaaggtgcggtccgatacctgtgttttggtggccatctcgttgaacattcagcaa
cgagtgcatccaattatttggaccgtcaacagtctaccttttgactgtctacaggtttac
ccgattcagaagcccattggtggttgtctggtgatgacagttaacgctgtaatctacctc
aatcagagtgttcctccatatggcgtcagtttaaacagctcagcagacaatagcactgca
tttccactgaagcctcaggatggcgttcggatcagtttggattgtgccaactttgctttt
attgatgtcgacaagctggtaatctcgcttcgcactggagatctatacgtgctcacgctt
tgcgttgactcaatgagaacggttaggaacttccatttccacaaagcagccgccagtgtg
ctaactagttgtatctgcgttctgcactccgaatacatatttttgggatcacgtctcgga
aactccctattgctgcactttaccgaagaggatcagagcacggtcattacattggatgat
gtggaacagcaaacggagcagcagcaaaggaatttgcaggacgaggatcagaatttggag
gaaatttttgatgtagatcaattggaaatggcacccactcaagcaaaatcgcgtcgcatc
gaggatgaggaactagaggtgtatggtactggagctaaggcatcggttcttcaactgcga
aagttcatttttgaggtgtgcgacagtcttatgaacgtagcaccaatcaactacatgtgc
gccggtgaaagagtggaattcgaagaggatggggctacgttgcgaccacatgcagaatct
ctgcaagatctaaaaatagagctagtcgctgccaccggtcacagcaaaaacggagctctg
tccgtatttgtgaattgcattaatcctcaaatcattacgagctttgagttagacgggtgc
cttgatgtgtggactgtgtttgatgatgccactaaaaagtcgtcgcgaaacgatcagcat
gatttcatgctgctttcacaaaggaattctactttggttctgcaaacaggacaggaaatt
aatgagatcgagaacacgggttttacggttaaccagccgaccatatttgtcggtaatctc
ggacagcaacggttcattgttcaggtcaccacccggcatgtcagattattgcaaggaact
cggttaatccaaaatgtgcccattgatgtgggctcgccagtggtacaggtgtctatagca
gatccgtatgtttgcctgcgagtgttaaatggtcaggttatcacattggcgctgcgagaa
acacgtggaactcctcgtttagctatcaacaagcataccattagcagctctcccgccgtt
gttgccatttcggcgtacaaagatttatcaggactattcacggtaaaaggtgatgatata
aatctgacgggcagctcaaacagtggatttggacatagttttggtggctacatgaaggca
gagccgaacatgaaggtggaggatgaagaagatcttctctacggcgacgccggaaatgct
ttcaagatgaacagcatggcggatttggcgaaacagtcgaaacaaaagaactcggactgg
tggcgacgtctgcttgtgcaagcaaagcccagctattggttaattgttgcccgccagagt
ggcaccttggagatctactctatgccggacatgaagcttgtgtatctcgtgaatgatgtg
ggcaatggtgctatggttcttacggatgcaatggaattcgtgcccatttcactgactacg
caggagaactcgaaggcgggtattgttcaggcttgtatgccgcagcatgctaactcccca
ctgccattggaattgagtgtaatagggttgggtctaaatggagaaagacctttattattg
gtcaggactcgagtagagctccttatataccaggtgttccgatatcccaagggccatctg
aagatacgtttccgaaagctggatcaactgaatttgctggaccaacagccgacgcatatc
gaattagatgagaacgacgcacaggaggagatagaatcttatcaaatgcaaccaaagtat
gtccaaaagcttcgaccattcgccaacgttggaggactctccggcgttatggtatgtggt
gtcaatccttgctttgtgtttctaacattccgaggagaacttcgcatacatcggctgctc
ggtaacggagatgtgcgtagctttgcagcctttaacaatgttaatattccgaatggattc
ctttactttgacaccacctatgagcttaagatctccgtgttacccagctacttgagttat
gactccacttggccggtgagaaaggttcctctcagatgtacaccaagacaacttgtttac
catcgcgagaatcgggtttactgcctaatcacgcaaacagaggaaccgatgaccaagtac
tatcgctttaacggagaggataaggagctgtccgaggaaagccgtggcgagagattcatc
taccccattggctcgcaattcgaaatggtattaatttctccagaaacctgggaaattgtg
ccagatgcatcaatttcgtttgagccctgggagcacgtcactgcttttaagatcgttaag
ttgtcctacgaaggtacaagatcaggacttaaggaatacctttgcattggaaccaacttc
aattacagcgaggatattaccagcagaggaaatattcatatttatgatattattgaagtg
gttcccgaacccggaaagccgatgaccaaattcaagataaaggaaatatttaagaaggag
cagaagggaccagtttctgccatttcagatgttttgggttttttggtcactggtcttggt
cagaagatctatatttggcagcttcgcgatggagaccttattggagtggcttttatagat
acaaatatctatgtccaccagattatcaccgtgaaatccctgatttttattgcggatgtt
tacaagtctattagtttactgcgcttccaggaggagtatcgcacattgtcgttggcctcg
cgagattttaatccgctggaggtttatggaattgaattcatggtggacaactccaatctg
ggtttcctggtgaccgatgccgagcgcaatttaattgtgtacatgtaccaaccggaggcc
agggaatcactgggtggccagaagctgctacgcaaggcggattatcacctgggtcaggtg
gtaaacaccatgtttcgagtgcagtgccatcaaaaaggattgcaccagcgccaacccttc
ctatacgaaaacaagcatttcgtagtttatggaaccctggatggagctctgggatattgc
ttgccccttcccgagaaagtttacaggagattcctgatgttgcagaacgttctcctctcc
taccaggaacacctttgcgggctcaatcccaaggaataccgcactctcaagtctttcaag
aaacaaggcatcaatccgtctcgttgcgtcattgacggagatttaatttggtcatatcgc
ctaatggccaattcggaacgcaatgaagtggcgaagaagattggcacgcggactgaagaa
atcctagccgatttgctggagatcgaacgactcgccagcgttttttag
DBGET
integrated database retrieval system