Drosophila yakuba: Dyak_GE21122
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Entry
Dyak_GE21122 CDS
T01068
Name
(GenBank) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dya
Drosophila yakuba
Pathway
dya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dyak_GE21122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dya03019
]
Dyak_GE21122
03041 Spliceosome [BR:
dya03041
]
Dyak_GE21122
03009 Ribosome biogenesis [BR:
dya03009
]
Dyak_GE21122
03016 Transfer RNA biogenesis [BR:
dya03016
]
Dyak_GE21122
Enzymes [BR:
dya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dyak_GE21122
Messenger RNA biogenesis [BR:
dya03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Dyak_GE21122
Spliceosome [BR:
dya03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Dyak_GE21122
Complex C
U4/U6.U5 tri-SnRNP related factors
Dyak_GE21122
Ribosome biogenesis [BR:
dya03009
]
Eukaryotic type
Pre-60S particles
Helicases
Dyak_GE21122
Transfer RNA biogenesis [BR:
dya03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Dyak_GE21122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
EDW89723
UniProt:
B4NY87
LinkDB
All DBs
Position
2L
Genome browser
AA seq
1047 aa
AA seq
DB search
MDIEELFDCFDEVSPAVPPPVVNQEEKPSGSGGAKKGSKRQAEDTASAKSSKESEGVDKE
EPTKRLRQEESKGALNDDDADDEPIRTIDLDDSAALEALRTRIVTHLLDAPKSCTHEVAA
HPDQEYIPLQPFSGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIA
KSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMTTEILRNML
YRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWV
CHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEA
GKGDQKGRNGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFN
TPDEKKLVDEVFNNAMDVLSEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFG
EGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDK
GIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQF
QNQAALPGLHDQVEEKTMELNKLTIKDEHNIASYHHIRSQLDQHGKQFRQWITKPQYLLP
FLQPGRLVKVAAGSQEYDWGIVLNFKKQDQSRKNPLKCEPSVTIDVLLHVSEAAAKTGDT
EPCKPNERGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPKGPP
VLNPIDDMNIKEREFRDIVNTIAQFETRLEEHPLHKSPELERIHRRYQDKVALQSQLQDL
KAELKAARSLLQMEELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNG
IFNDLTAPQAVALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKVSTECKLDLDA
DTYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQASKTIG
NTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggatatagaagagctgttcgactgctttgatgaagtgtcgccggcagtgccgccaccg
gtagttaaccaggaggagaagccctcggggagcggtggcgccaaaaagggcagcaaacgg
caagcggaggacaccgcttctgcgaaatcctccaaagaatcagaaggagttgacaaagag
gagccgaccaagcgtctgaggcaggaggagtcaaagggtgcgttgaatgacgacgacgca
gatgacgaacccattcgtaccatcgatttggatgattctgcggctctggaagccctgcgg
accaggattgtgacccacttattggacgcacccaagtcatgcacccacgaggttgccgcc
catcccgaccaggagtacataccactacagccgttcagcggcgtgcctgcgaaggagtac
cccttcgtgctcgatccgttccagcgccaggcgattctgtgcattgacaacagtcagagt
gtcctggtttccgcccacacgtcagccggaaagaccgtggttgcggagtatgccatagca
aaatcattggctgccaagcagcgggttatatacaccactcccatcaaggctctgtccaac
cagaagttccgcgaattcactgacgaatttaaggacgtaggtctcgttaccggtgatgtg
accataaatccatcggcctcctgtttgatcatgaccactgagattctgcggaacatgttg
taccgcggaagcgagatcatgcgcgaggtgggctgggtgatcttcgacgagattcactac
atgcgcgacaaggagcgcggtgttgtttgggaggaaacgctcatccttctgccagacaac
gtgcgatatgtctttctttcggccactattcccaatgctaggcagttcgcagagtgggtg
tgccaccttcacaagcagccatgtcatgtagtctacactgactaccgtcccactcctctg
cagcactacatcttcccggccggaggggatggtatccatcttatcgtcgacgaaaagggg
cagttcaaggaagataacttcaccactgcaatggcagtgctcgccaatgcaggtgaggct
gggaaaggagatcagaaaggacgcaatggtggcattaaaggaactaatgctggacaaaca
aatatctttaaaatcgtcaagatgatcatggagcgcaattttgcaccggtaattattttc
tcgtttagcaagaaggactgcgagatctatgccatgcagatggccaagctggactttaac
actccggacgaaaagaaactagtcgacgaggtgttcaacaatgccatggacgtgctctcg
gaggaggatcgtcgcctgcctcaggtggaaaacgtattgccgttgttgcgtcgaggcatt
ggcatccatcacggcggtctgctgcccattctgaaggagaccatagagattctgtttggc
gaaggtctgatcaaggccctgttcgccaccgaaacgtttgccatgggccttaacatgccg
gctagaactgtgctatttacggctccacgtaagttcgatggcaaggacttccgatggatc
agctctggcgagtacatccagatggcgggacgtgccggtcgacgaggtttggatgacaag
ggcatcgtcatcctcatgatcgacgaaaaagtttcgccagccgttggtcgtgacattgtt
cagggcaaggcagatccaatcaattcggctttccatcttacatacaatatggtgctaaat
ttgctacgcgtggaggaaatcaatccggagtatatgctggaacgcagtttctatcaattc
cagaatcaagctgcactgcccgggctgcatgaccaggtggaagagaagacgatggagctg
aataagctgactatcaaggacgagcacaacattgcctcctaccatcacatacgttcccag
ctggatcagcacggcaagcagtttcgtcagtggataacgaagccacaataccttttgccg
tttttacagcctggtaggttggtcaaggtagcagccggctcgcaggagtacgactggggg
attgtgttgaactttaagaaacaagaccaaagccgcaagaaccctttaaagtgtgagccc
agcgtcaccattgatgtgttactgcacgttagtgaagcggccgccaaaaccggcgacacg
gagccatgcaaaccgaacgaacgtggatgcatggaggtggtaccggtggcccacaccctc
atcactcagatcagctcaattcgcgtgtacttccccaacgatctgcgcagtgctgacaat
cggcgagccgtgctgaagaccatccaggaggcaaagaaacgtttccccaagggaccaccg
gtcctcaatcccatcgatgacatgaacatcaaagaacgagagttccgcgatattgtcaat
accattgcccaattcgagacgcgactagaggagcatccgctgcacaagtcaccggaattg
gagcgcatccaccggcggtaccaggacaaggtagcgctgcaatcgcaactgcaagacctg
aaggccgagctaaaggctgcccgcagtctgctgcagatggaggagttgaagcatcgcaag
cgtgtgcttcggcgcatgggctactgcaaacctggcgacgtcattgagtttaagggccgt
gttgcctgcgaactgagctcggcggatgaacttctcatgaccgagatgatctttaacgga
atatttaacgacctcaccgctccgcaagccgtggctctcctctcctgctttgtttgcgac
gagaagtccagcgagtcggtgaaaagcgccacggagctatcgggaccactgcgctcgatg
caagatctggcgcggcgcattgccaaggtgtccacggaatgcaaactcgatctggacgcc
gatacgtacgtggacaaatttaagcccttcctgatggacgtggtgctggcgtggtgcaag
ggctccagtttccttgcggtctgcaagatgaccgacatcttcgaaggctccatcatccga
tgcatgaggcgactggaggagcttctacgtcagatgtgtcaggcctcgaaaaccattggc
aacactgacttggaaaacaagttctccgaaggaataaggttgctcaagcgtgacattgta
tttgccgcgtcgttgtatctataa
DBGET
integrated database retrieval system
