Dyadobacter chenhuakuii: NFI80_04870
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Entry
NFI80_04870 CDS
T08460
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dyc
Dyadobacter chenhuakuii
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyc03032
]
NFI80_04870 (topA)
03400 DNA repair and recombination proteins [BR:
dyc03400
]
NFI80_04870 (topA)
Enzymes [BR:
dyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NFI80_04870 (topA)
DNA replication proteins [BR:
dyc03032
]
Prokaryotic type
DNA Topoisomerases
NFI80_04870 (topA)
DNA repair and recombination proteins [BR:
dyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NFI80_04870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Extensin_1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
USJ32071
LinkDB
All DBs
Position
complement(1174404..1176866)
Genome browser
AA seq
820 aa
AA seq
DB search
MSKNLVIVESPAKAKTIESYLGADFTVKSSFGHVRDLPEHDMGVDVEHGFQPSYEISADK
VKVISELKKLAKGAEVWLATDDDREGEAISWHLKEALGLPDDTKRIVFREITKTALQNAI
SKPRIIDVDLVDAQQARRILDRLVGYELSPVLWKKIRIGKSNLSAGRVQSVAVRIIVERE
REIDAFRSKSSFKVTAHFDLGNGKVLNAELAKNFPQEEDAMKFLEKCIGAQFSIKSLEVK
PAKKTPAPPFTTSTLQQEASRKLSFSVAQTMTVAQRLYEAGKISYMRTDSTNLSEEALEK
ARVQITKEYGQDYYNKRIFKTKNESAQEAHEAIRPTDFSTLNGSSDRNEQRLYELIWKRA
IASQMSDAQLERTTATISISTTSEELVAQGEVIKFEGFLKVYMESSDDEGDEEQKGMLPP
LNINQILNLADMKATERFTRNPPRYTEASLVKKLEEMGIGRPSTYAPTISTILRREYIVK
EDRQGTERDFKELTLANNQINSKVNKEIYGSEKAKLFPTSTGMVVNDFLVSHFNDIIDYS
FTANVEKDFDHIAEGQLEWRQMIKNFYTPFQKKVTEANEEAIDRSLTSRDLGEDPATGKK
VSVRIGKYGPYVQIGDAEDEEKPKFASLMKGQLMENITLEEAFELFKLPREVGLYEEKEL
IVNIGKFGPYVKHDGKYYSLARTDDPMAVTEDRLIEIITEKRLQDSNRTIKEFAEDPDAK
VLNGKYGPYIAFGKKNVKIPKGTEPASLTYEEVVKLAAETPDKPAGRFGKKPVAKAAVVK
APAEKKVAEKKPAAKKPAAKKAAAKPAAKKPAAPKAAKKS
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaatctggtgatcgttgagtcaccggcgaaggccaaaaccattgaaagttat
ttaggagcagatttcaccgtcaagtcaagtttcgggcacgttcgtgaccttccggagcat
gatatgggtgtggatgttgagcatggtttccaaccttcttatgaaatttccgctgataaa
gtaaaggtgatatccgagcttaaaaaactcgccaagggcgcagaagtatggctcgcaacg
gatgatgaccgcgaaggagaggcgatttcgtggcacttgaaagaagccttggggttaccc
gacgacactaaaagaattgtgttcagggagattacgaaaactgctttacaaaatgcgatt
tccaaaccgcgtataatagatgtagatctggtggacgcgcagcaggcacgccggatcctg
gacaggctcgtaggttatgagctttccccggtgctctggaaaaaaataagaattggtaaa
tcaaacctttcggccggacgtgtgcaatctgttgcggtccgtattattgttgaaagggaa
agggaaatcgatgcgttcagaagcaaaagcagcttcaaagtgactgcgcattttgatctt
ggaaatggcaaagtcctgaatgcagaattggcgaagaactttccccaggaagaagatgcg
atgaaatttctcgaaaaatgcatcggcgcacagttctccatcaaaagccttgaagttaaa
ccagccaaaaaaacaccagcaccgccattcacaacttctacattacaacaggaagcatcc
cgtaagctgagcttttccgtagcgcaaaccatgaccgttgcacaacggctttacgaagct
ggtaaaatctcctacatgagaacggactccacgaatttgtcggaggaagcattggaaaaa
gccagggtgcagattacgaaggaatacggacaggattattataataaaaggatattcaag
accaaaaacgagtcggcgcaagaagctcacgaagccatcaggccaactgatttttctaca
ttaaatggcagcagcgaccgcaatgagcagcgcttgtatgagctgatctggaaacgtgcc
atcgcatcacaaatgtcggatgcgcaactggaacgcacaacggcaaccatttctatttca
actacttccgaagaactcgttgcacaaggcgaggtgatcaaattcgaaggtttcctgaaa
gtatatatggaatccagcgacgatgaaggcgatgaagagcagaaaggaatgctgcctccg
ctgaacattaaccagatcctgaacctggcagacatgaaagcgacggaacgcttcacaaga
aacccgccccgctatacggaagcaagtttggttaaaaagctggaagaaatgggcatcgga
cgtccatccacatacgcacctacaatttctaccatattaaggcgcgaatacattgtaaaa
gaagaccgccagggaacagaacgtgattttaaagaactgacgctggctaataaccagatc
aacagcaaggtcaataaagaaatttacggctcggaaaaggcaaaactctttcctaccagc
accggaatggtcgtgaatgactttctggtaagtcattttaatgacattattgattactct
tttacggctaatgttgagaaggattttgaccacattgccgaaggccagctcgaatggcgc
cagatgatcaagaacttttacacgccatttcagaagaaagtaaccgaggcaaacgaagaa
gccatcgaccgcagcctcacgtcgcgcgatctgggcgaagatcctgcaacgggcaaaaaa
gtatccgtaagaatcggtaaatacggcccttatgtgcagatcggtgatgcggaagatgag
gaaaaaccaaaatttgcgagcttgatgaaaggtcagctgatggagaacattacgctggaa
gaagcttttgaattatttaaactgccacgcgaagtaggtttgtacgaggagaaagaattg
atcgtcaacatcggaaaattcggcccatatgtaaagcatgacggcaaatattattctctg
gcaagaacagacgatccaatggctgtcacagaagacagactgatcgaaattatcactgaa
aaacgcttacaggacagcaacaggaccattaaagagttcgccgaagatccggacgcgaaa
gtgctgaatggtaaatacggaccttacattgcttttggaaagaagaatgttaagattccg
aaaggaacagaaccggcatcgcttacctacgaagaagtagtgaagctggcagcagagaca
ccggataagcctgcgggaagatttggcaagaaaccggtggctaaggcggctgttgtaaaa
gcaccggcagagaaaaaggtggcggagaaaaaaccggcagccaaaaagccagcggcgaaa
aaagcagcagcgaaaccggcggctaagaagccggcagcacccaaagcagcgaaaaagagc
taa
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