Dyadobacter chenhuakuii: NFI80_05225
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Entry
NFI80_05225 CDS
T08460
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03030
DNA replication
dyc03430
Mismatch repair
dyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFI80_05225 (dnaE)
03430 Mismatch repair
NFI80_05225 (dnaE)
03440 Homologous recombination
NFI80_05225 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyc03032
]
NFI80_05225 (dnaE)
03400 DNA repair and recombination proteins [BR:
dyc03400
]
NFI80_05225 (dnaE)
Enzymes [BR:
dyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NFI80_05225 (dnaE)
DNA replication proteins [BR:
dyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NFI80_05225 (dnaE)
DNA repair and recombination proteins [BR:
dyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NFI80_05225 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti-like
MCM10_OB
HHH_3
Cytochrom_C_2
Motif
Other DBs
NCBI-ProteinID:
USJ32141
LinkDB
All DBs
Position
1262000..1265650
Genome browser
AA seq
1216 aa
AA seq
DB search
MQFSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIK
PIVGCEFYVVEDRHIRQFTKDKKDVRHHQLLLAKDEQGYKNLVKMCSLGFIEGMYGKYPR
IDKELIVKYHKGLIATTCCIGAIIPKTILRKSEEEAEREFKWWLDLFGEDFYVELQRHEI
RDQLIVNQVLVKFARKYNVKIIASNDSHYVDQEDWNAHDILLCINTGDKQSTPSAKDFDD
DKGIPKGSRFAFFNDQFYFKNTSEMMKLFNDLPESLDNTNEIVDKIKALDLRKDILLPNF
PIPEEFKTHTLSEMFGKKELTADVLNQWEYLKHLTFEGAKFKYGTITPEIEDRLNFELQT
IRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSVVAYCTGITNIDPIKYDLLFERF
LNPDRISLPDIDTDFDDEGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIKDVARVMDL
PLADANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLTKKEGIAPEELDNVKKMRAIALGN
DLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQYQGKIIED
AGVIKMDFLGLRNLTIIKEALRLIKQNHNVDIVIDDIPLDDPKVFELFQRGETNAIFQFE
SDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGLEEVTYDLPELEEYLAD
TYGITVYQEQVMLLSQKLGGFTKGQADTLRKAMGKKQIETLNKMKGDFMKGGAEKGLDTK
KLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTAEYMSAVLTSSLGNIEKITF
FMEECKAQGLKVLGPDINESDRQFNANKKSEIRFGLAGVKGSGDAAVESIIEERNQNGPF
KDIFDFIIRVNLRTVNKKTIESLAYAGGFDCFPEYHRAQYFATEPGESGTFIEKLIRYAN
NYHAEKASAQSSLFGAFGGNEILMSKPKAAEVMPWDDLAKLRYEQDVVGFYISGHPLDTF
RVELDNFCNCTVDKVMEIGENERAPKYFGKEINVGGIVTSAQERMSRNGSLFMIFKIEDY
RGSMEMLLGGEDYIRFKNYLQVGQFLYIKGKVQNRWKQEDQFEFKISQIQLLTEIREKMC
RKIRINLTLDQIDAQFIHLLNETFGNHPGACAVNMTVVDPETHLEVEMVSRGYRVAPTNE
LFKVLNGFHGVKFFLN
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcacacttgcactgccacacccaattttcacttctcgacggtgcggcggat
ataaaaaagcttttcaaaaaggccaaggaagacaatatgcctgccgttgccatcacggat
catggaaacatgtttggcgtgttcgaatttgtagcggaaggcaataagcagggaattaag
ccgattgtaggatgcgaattttatgtggtggaagaccggcatatccgacagtttacaaaa
gataaaaaggacgtccggcatcaccagttgctgctggcaaaagacgaacagggatacaaa
aacctggttaaaatgtgttcgctcggctttatagagggaatgtatggcaagtatccccgg
attgataaagagctgattgtcaagtatcataagggattaattgccacgacttgctgcatt
ggagctattattccgaagaccattttaagaaagagtgaagaggaagcggagagggaattt
aaatggtggctggatctgttcggagaagatttctatgtggaattgcaacgccatgagatc
cgcgatcaattaattgtgaaccaggttcttgtcaaatttgccaggaaatacaatgttaag
attatcgcctccaatgactcgcattatgtggatcaggaagactggaatgcgcatgatatc
ttgctgtgtatcaatacgggcgataagcaaagcacgccttcggcaaaggattttgacgat
gataaaggcattccgaaaggctcgcgtttcgcgtttttcaatgatcagttttatttcaaa
aacaccagcgaaatgatgaagctgttcaacgacttgcccgagtcgctggacaatacgaat
gaaattgtagataaaataaaagccctggatctgcggaaagatattctgctgcctaatttc
ccgattcccgaagaatttaagacgcatactttgtcggaaatgtttggtaaaaaggagctt
acggccgatgtgttaaaccagtgggaatatctcaaacaccttacattcgaaggggcgaag
ttcaaatatggaacgataacgcctgagatagaggaccgtctgaactttgagctgcaaacg
atccggaacatgggttttccgggttacttcctgatcgtggccgattttattgacgcaggc
cgcaaaatgggcgttttcattggtccaggacgtggttcggcagccggctccgtggtggcc
tattgcaccgggatcaccaacattgacccgatcaagtacgacctgcttttcgagcgtttc
ctgaatcctgaccgtatttcacttcctgatattgatacggatttcgatgatgaaggccgt
cagaaagtgatcgattatgttgttaaaaaatatggctataaccaggttgcgcaaattgta
acatacggcacgatggccgccaaatcggcgatcaaggacgtagcgcgcgtgatggacctg
ccgcttgcagatgctaatatgctcgcgaaacttgttccggacaagcccacctataatatg
acgcttaaccggatctttacagcgccgctggaaggagaggggagtttgacgaagaaagaa
ggaattgcgcctgaggagttggataatgtgaagaaaatgcgcgctattgcactaggcaac
gacttgcaggcaagcgttttacaagaagcaagaaggctggaaggaactgtgcgaaacacg
ggaattcacgcagcagggatcattatcgctccaagtgatttaactgaaatcattcccgta
agcacatccaaagattccgacttcctgattacgcaatatcaggggaagattattgaagat
gcgggggttattaagatggactttttgggtctgcgaaacctgacgatcattaaggaagca
ttgcggctgatcaagcagaaccataatgtcgatatagtgatcgacgacattccgctggac
gatcccaaagtgtttgaattgttccagagaggtgaaaccaacgcgattttccagtttgaa
tccgatgggatgaaaaaatatatgcgcgacctgatccccgatcgtttcgagcacttgatc
gccatgaacgcattataccgcccgggtccgatcgcctacattccgaacttcatccgccgt
aaaaatggattagaggaagtaacatatgatttaccggaactggaagagtatctggcggat
acatacgggattacggtttaccaggagcaagtaatgcttctgtcccaaaagctgggcgga
ttcaccaaaggacaagctgatacattgcgtaaagcaatgggtaagaagcagatagaaacg
ctgaacaaaatgaagggcgacttcatgaaaggcggcgcggagaaaggcctggataccaaa
aagctcgaaaagatctggacggactgggaggcttttgcatcttatgcatttaacaaatcc
cactcgacatgctacgccttcgttgcttaccagacagcctatctgaaagcgcattatacc
gcagaatacatgtctgctgtattgacgagctcgctgggcaacattgaaaagatcacattc
ttcatggaggaatgtaaagcgcagggattgaaggttttagggccggatattaatgagtct
gacaggcagttcaatgcaaataagaaaagtgagatccgttttggactggcaggtgtgaag
ggaagcggcgacgcggccgtggaatccatcatcgaggagaggaatcagaacgggccgttt
aaagatatatttgattttatcattcgcgtcaacctgcgaaccgttaataagaagacgata
gaaagtctggcttatgcaggtggattcgactgttttccggaatatcaccgtgcgcagtat
tttgcaaccgagccgggagagtcaggaacatttattgaaaaattgatccgttacgccaat
aattatcatgcagaaaaggcctcggcacagtcgtcgctttttggtgcatttggtggaaat
gaaatattgatgtctaagccgaaggcagccgaggttatgccttgggatgatctggcgaag
ctgcgttatgagcaggatgtggttggtttttatatttccgggcatccactggatacattc
agggtagagcttgacaacttctgtaactgcacggtagacaaggtgatggagatcggtgaa
aacgaacgggcacccaaatattttggcaaggaaatcaatgtgggcggaatcgtaacgagt
gcgcaggaacgcatgtcgcggaatggcagcttgtttatgatcttcaaaatcgaggattac
cgcggctcgatggaaatgcttttgggtggtgaggattacattcgtttcaaaaattactta
caggttggtcagttcctgtacattaaaggcaaggtgcagaaccgctggaaacaggaagat
cagtttgagtttaaaatttctcagatccagctgctgaccgaaatccgtgagaagatgtgc
cgcaagatccgtataaacctgactttggatcagattgacgcgcagtttattcatttgctt
aacgaaacctttggtaatcaccccggtgcgtgcgcggtaaatatgaccgttgtagatcct
gaaacgcatttggaagtggaaatggtgtcgcgcggttaccgggttgcgcctacgaatgaa
ctgttcaaagtgctcaatggatttcatggggtaaaattctttttaaactaa
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