Dyadobacter chenhuakuii: NFI80_06055
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Entry
NFI80_06055 CDS
T08460
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NFI80_06055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dyc03400
]
NFI80_06055 (ligD)
Enzymes [BR:
dyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NFI80_06055 (ligD)
DNA repair and recombination proteins [BR:
dyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NFI80_06055 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
GH3
DNA_ligase_OB_2
Pep3_Vps18
Motif
Other DBs
NCBI-ProteinID:
USJ32300
LinkDB
All DBs
Position
complement(1431685..1434429)
Genome browser
AA seq
914 aa
AA seq
DB search
MSLTKYNEKRSFEKTPEPKGGKADSEELIFVIQKHHASRLHYDFRLEMDGVLKSWAVPKG
PSLDPATKRLAMMVEDHPYDYKDFEGIIPKGNYGAGTVMVWDEGTYEPLEEAKTKKEKEK
ILLKELASGSVKIRMKGKKLKGEFALVKTKGMSENSWLLIKHRDKFASDADITKKDKSVI
SNKTLEGIKATTDNVYGESKADKKKADKAEKKKDKEDEAAPIDEYLANEKDDKSDEKSAA
ALLKKGKKAPFPEDIVPMLATLVDGPFDDPGWEYEVKWDGYRAIAYMNKGVTELKSRNKK
SFNDKFYPIHEGLCDWKINAVLDGEVVVINEKGHSDFGALQNWRSEADGELIYYVFDILW
YEGKSLMHLPLTERKAILQSIVTEDSPVRIGYSIASEGTAFFEAAREMGLEGIIAKRSDS
PYLAGLRTNDWLKIKVNKRQEVIIAGYTRNAGTSKHFSALLLAAYDQGVLQYVGKVGTGF
KDKQQKEMLELFKPLETENSPFKETPDYNKPSRFRPNPPKANATWLKPELVCEVSFTEVT
SDGVFRHPSFEGIREDKKAKDVVREIEQPTEQVVDEEKKPEAKSAKKSEKKDEIIPKPAK
SKRKTLLNPTDETQVRKINGNEVKFSNLSKIFWHQEKITKRDLINYYYQIAPFILPYLEK
RPLSLNRYPNGIDGKSFYQKDVTGKVPAWVETFPYTSNDEEQEKNFMICNDEAALLYMAN
LGCIDMNPWNSRTNKPDNPDWCLLDLDPDTTNTFEQVIETALVIKQLLDSLDIKSYCKTS
GSTGLHIYIPLGAKYSYDQCQLFAQWVASQVQQELPSFTSIERMTKNRKGKLYIDYLQNR
PKATLAAPYSVRPKPGATVSMPLHWEEVKIGLQLRHFTILNAMDRLENEGDLFKPVLGEG
IDLEAAIGKIEAGK
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccaaatacaacgagaaacgttcatttgaaaaaacacctgaaccaaaaggc
ggtaaagctgattcggaagaactcatttttgtcatccagaaacatcatgcgtccaggctc
cattatgatttcaggctggaaatggatggtgtgctgaaaagctgggcggtccccaaaggc
ccgtcgctggaccccgcaacgaagcggctggccatgatggttgaggaccatccttatgat
tataaagattttgaaggcataatcccgaaaggcaactacggcgcaggaactgtaatggtt
tgggatgaaggcacttatgagccattggaagaagcaaagacaaagaaagagaaagaaaaa
atactactcaaagaacttgcctccggctccgtgaagatcaggatgaaaggcaagaaactg
aaaggtgaatttgcattggtcaaaacaaaaggaatgtcagagaactcctggctgctcatt
aagcacagggataaatttgcatcagacgcggacattacgaaaaaagacaaatcggttatc
tcaaacaaaacactggaaggaataaaagcgaccacagacaacgtttacggagaatcgaaa
gcggacaaaaagaaggctgacaaagccgaaaaaaagaaagataaggaagacgaagccgct
ccgatcgacgaatatttagcaaatgaaaaggatgataaatccgacgaaaaaagcgccgca
gcgcttctaaagaaaggtaaaaaagcgccattccctgaggacattgtgcccatgctcgct
acgctcgtggacgggcctttcgatgatcccggttgggaatacgaggtcaaatgggatggt
taccgcgccattgcctacatgaataaaggcgttacagagctgaagtcacgcaataaaaaa
tctttcaatgacaagttctatcccatccatgaaggcctttgcgattggaaaatcaatgct
gtgctggatggtgaggttgttgtgatcaatgaaaagggccattcggattttggcgctctg
caaaactggcggagcgaggcggacggagaattgatttactatgtgttcgatattctttgg
tatgaaggtaaaagcctgatgcatttgcctctgaccgagcggaaagccattctgcaaagc
attgttacagaggacagtccggtccggattggttacagcattgcttcggagggaactgct
ttttttgaggcagcacgggaaatgggcctggaaggcattatcgctaaacgatccgacagc
ccttatcttgccgggctgcgtacgaatgactggcttaaaatcaaggttaacaaacggcag
gaagtaatcattgcgggctatacccgcaacgcaggcacgtcgaagcatttcagtgcgcta
ctacttgctgcgtatgaccagggcgttcttcagtatgtggggaaggttgggactggtttt
aaggataagcagcaaaaggaaatgctggaactcttcaaaccgctggaaacagaaaacagt
ccattcaaggaaacgccggattataacaaaccttcccgtttccggcccaatccgccgaag
gcaaatgcaacctggcttaaaccggagcttgtttgtgaagtaagttttacagaagtgact
tcggacggcgtattcaggcatccgtcatttgagggaatccgggaagataaaaaggcgaaa
gacgtggtccgtgagatcgagcagcctaccgagcaagtggttgacgaggagaagaaaccg
gaagctaagtctgccaaaaagtcggagaaaaaagatgaaattattccaaagcctgcaaaa
tcgaaacgtaaaacgctgcttaatccaaccgacgagacgcaggttaggaaaatcaatggt
aatgaggtgaagttttcaaacctgagcaagattttctggcatcaggaaaaaatcaccaag
cgggatctcatcaactactactatcagatagcccctttcatattgccctacctggaaaaa
agaccgttgtctttgaaccgctatccgaatgggatcgacggcaaaagtttttatcaaaag
gatgttacaggtaaagtgccggcctgggtagaaacattcccttacacttccaatgacgaa
gaacaggaaaagaatttcatgatatgcaatgatgaagctgcattgctctatatggcgaat
ctgggttgcattgatatgaacccctggaacagccgcaccaataaacccgacaaccccgac
tggtgcctgctcgaccttgatccggacacaaccaacacattcgaacaagtgatagaaacg
gcactcgttatcaagcagttgctggattcgctggacattaaaagttattgcaaaacctca
ggttccacaggcctgcacatttatattccgctgggcgcaaaatattcgtacgatcaatgc
cagctctttgcgcaatgggtcgccagccaggtgcaacaggaattgccaagcttcaccagc
atcgagcggatgactaaaaaccggaaggggaagttgtacatcgattatctccagaacagg
cccaaggcaacacttgccgctccctattcagtgcggcccaagccaggcgcaacggtatcg
atgccgctgcattgggaagaagtaaaaattggtttgcaactgcgccattttacgattctg
aatgccatggaccggttggaaaatgaaggagatctgtttaaacccgtgctcggcgaaggc
attgacctggaagcggcgataggaaaaattgaggcgggaaaataa
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