Dyadobacter chenhuakuii: NFI80_10195
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Entry
NFI80_10195 CDS
T08460
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI80_10195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyc03019
]
NFI80_10195
03009 Ribosome biogenesis [BR:
dyc03009
]
NFI80_10195
Enzymes [BR:
dyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NFI80_10195
Messenger RNA biogenesis [BR:
dyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI80_10195
Ribosome biogenesis [BR:
dyc03009
]
Prokaryotic type
rRNA helicases
NFI80_10195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UBA_7
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USJ33105
LinkDB
All DBs
Position
2460670..2462445
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AA seq
591 aa
AA seq
DB search
MTTENFETFEELGLSENILKALTEMGFTKPSPIQAQGIPAVMQGSDVIGQAQTGTGKTAA
FGIPVLERIDVSNNAVQALVLCPTRELAVQVSEEIGRLAKYVKGLRIEAIYGGDSIDRQI
RSLKKGVHIVVGTPGRVMDHMERKTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPA
DRQTILFSATMSKPIMSITKRFQTDPILIKVVRNELTNVNIEQVYFEVKPQAKVEVMTRL
IDMHHLKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTIL
VATDVAARGIDVSGLDGVINFDIPLDEEYYVHRIGRTGRAGLSGKAFSLVARDEKYRLKT
IESFTKVKIEKGVIPSYEDIVGVRKARFVESISASIKEGDDQELFGDVLEMLHHAGYSTE
QVVGAMAKQIMGVQKNEYADANLAWEERRGERDGRREGGSDRFERRSSGGSRFGDRRESA
PRGNDRYAPAARGESRPRFEGGRDESKRSATPEAGMTRLFLSLGRKDHILPKDIVGAIAG
EANIPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQIDIAK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgactactgaaaatttcgaaactttcgaagagcttggcctctcagaaaacatccttaaa
gcccttactgaaatgggttttactaaaccctcacccatacaggcacaaggaattcccgca
gtaatgcagggatctgacgtgatcggacaagcacaaacaggaaccggaaaaacggcagcg
tttggtattcccgtgctggaaagaattgatgtatccaataatgccgttcaggcactcgtg
ctttgccctacccgcgaattagcggtgcaggtttccgaagaaattggccgtttggctaaa
tatgtaaaaggattaagaattgaagcaatctacggtggtgattctatcgaccgccagatc
cgctcgctgaaaaaaggtgttcacattgttgtaggaacgccaggccgtgtgatggaccat
atggaacgcaaaacgttgaaatttgacgaagtgcgcatgatggtgcttgacgaagcagat
gaaatgttggatatgggtttccgcgaggacatcgaaagcattctggcagatatgccggct
gaccgtcagacgatcttgttctcagcaacaatgtctaagccgattatgtcaatcacaaaa
cgtttccagaccgaccctattttgatcaaagtggttcgtaatgagctgactaacgtgaac
attgagcaagtttacttcgaagtgaagccacaggctaaggttgaagtaatgacgcgcctg
atcgacatgcaccatttgaaatcgcttttggttttttgtaataccaaaagaaaagtggac
gaaatcgttgaagatcttcaattgagaggatatgcttcggaaggaatccacggcgatttg
cgccagcagcaacgcagcaatgtaatgagcaaattcaaggcaggtgtaacaaccattctt
gtggctacggacgttgcagcacgcggaattgacgtaagcggactggatggcgtgatcaac
tttgacattcctttggacgaagaatattacgtacaccgtatcggccgtacaggtcgtgcc
ggattgtccggaaaagcattctcactggttgcccgcgatgaaaaatatcgtttgaaaacc
attgaaagttttaccaaagttaaaattgaaaaaggagtaattccttcttacgaagatatc
gtaggtgtgcgtaaggcacgtttcgttgaaagcatttctgcttctatcaaagaaggcgac
gatcaggagcttttcggcgatgtattggaaatgttgcaccacgcaggttattctaccgag
caggttgtaggcgctatggctaagcagatcatgggcgttcagaagaacgaatatgcagat
gctaacctggcttgggaagaaagacgtggcgaacgcgacggacgcagagaaggcggcagc
gacagatttgagcgccgttcatcaggaggaagccgttttggagatcgcagagaaagcgct
ccacgcggaaacgaccgttacgctcccgcagcgcgcggagaatcacgtccaagattcgaa
ggcggccgcgacgaatcgaaacgttcggctacaccggaagctggcatgacgcgcttgttc
ctgagccttggccgtaaagatcacattttgccaaaagatatcgttggagccattgccggc
gaagcgaacattccaggtaaaacgatcggtgcgattgatatttatgacaaattcacattt
gtagatgttcctgagcgtgatgcccgtgcggttttgcgtgcaatggacggcaacaccatt
aaaggtaagcctgtacaaattgatatcgctaaataa
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