Dyadobacter chenhuakuii: NFI80_11820
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Entry
NFI80_11820 CDS
T08460
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI80_11820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyc03019
]
NFI80_11820
Enzymes [BR:
dyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NFI80_11820
Messenger RNA biogenesis [BR:
dyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI80_11820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
USJ33411
UniProt:
A0A9X1Q9D3
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All DBs
Position
2855899..2857041
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AA seq
380 aa
AA seq
DB search
MTFQDLKLIEPIAKALQEEGYTTPTPIQAKAIPIILDQKDLLGCAQTGTGKTAAFAIPML
QLLHNNPVGKFEKSRIRALILTPTRELAIQIGESFAAYGRHTGVKHTVIFGGVGQKPQTD
ALQRGVDVLIATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPAK
RQSLFFSATMPPAIVTLANTILRNPLKVEVTPVSSTADTIRQSVFFVDKSDKNSLLLHIL
RDESIATALVFTRTKHGADKVVKVLRKAGVSSEAIHGNKSQNARQNALKNFKSQTTRVLV
ATDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIAFSFCDLDEKVYLKDI
HKLIAKNIPVVNDHPYATGR
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaagatttaaagctcattgagcctattgctaaggctcttcaagaagaagga
tacaccactcccacccccatccaagcgaaagcgatccccattatcctggatcagaaagat
ttactaggctgcgcgcagacaggcacaggaaaaacagcagcatttgctattccaatgctt
caattgcttcataataatccagttggaaaattcgagaaaagcagaatccgcgcattaatt
ttaacgccaacacgtgaacttgcgatccagatcggtgaaagtttcgctgcttatggtcgg
catacgggtgttaagcatacagtgatctttggtggagttggtcaaaaaccacaaacggat
gcgcttcaaaggggcgtagacgtgcttatcgcaacaccaggacgtttattagaccttatt
aatcaaggctttatcaagctgaaccagctcgaattctttgttctggatgaggctgacagg
atgctggacatgggttttgtgcatgatgttaaaaaagtgatcaagctgcttcccgctaaa
aggcaatcgctgtttttctcagctacaatgccaccagccattgtaacattagctaatacg
attttaagaaatccgctgaaagtagaagtaactccggtttcctccactgcggacaccatt
cgtcagtctgttttttttgtagataaatctgataaaaattcgcttttactacacattttg
agggacgaatccattgcaactgcattggttttcacccggacaaagcatggagcagataaa
gttgtgaaggttttgagaaaagcaggcgtgagctctgaggcaatccatggaaacaaatcc
cagaatgcccgtcagaacgctttgaaaaactttaaaagccagaccaccagggttttagta
gcaacagacattgctgcaaggggaattgacgtggatgacttgacacacgttatcaactac
gagatccctaacattcctgaaacttacgtgcatagaatcggtagaaccggtcgtgctggc
gccaagggaattgcattttcattctgtgatctggatgaaaaagtctatctgaaagacatt
cacaaactgattgccaaaaatatcccggttgtaaacgaccatccgtacgcaacgggccgg
taa
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