Dyadobacter chenhuakuii: NFI80_18745
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Entry
NFI80_18745 CDS
T08460
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI80_18745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyc03019
]
NFI80_18745
03400 DNA repair and recombination proteins [BR:
dyc03400
]
NFI80_18745
Enzymes [BR:
dyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NFI80_18745
Messenger RNA biogenesis [BR:
dyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI80_18745
DNA repair and recombination proteins [BR:
dyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NFI80_18745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HemN_C
Cas3-like_C_2
DUF5805
Motif
Other DBs
NCBI-ProteinID:
USJ29901
LinkDB
All DBs
Position
complement(4505710..4507659)
Genome browser
AA seq
649 aa
AA seq
DB search
MTDLHAILKQYWGYDTFRPFQEDAIKTVLNGIDTLVLLPTGGGKSVCFQVPVLAMEGVCI
VVTPLIALMKDQVEQLKRRSIFAAAIHSGMSKNEIDITLDNCIHGNTKFLYVSPERLRTD
IMVARVKQMNVCLLAIDEAHCISAWGYDFRPAYLLISDFRKIIAGVPSPAGKRQDVPLMA
LTATATEEVRADILEKLEMRNARVFKQSFARANLSYSAFSEENKERKLLQILKNVAGTAI
VYVRTRKRTKELADWLNRQGISAQNYHAGLPFRERSDRQTAWIKNQVRVVVATNAFGMGI
DKPDVRAVVHFDLPDNLEAYYQEAGRAGRDEQKAYAVALFTKIDLEELSESVERKYPPIE
VLKRVYQALANYYKLAVGGGEFASFDFDIQEFTGVFGLAVNETHYALKLLEEEGFLQLSE
SFNDASKIHFLVDNRQLYDFQIRYQEMDSFIKVILRMYGGELFTEYVRISENELGQVYFA
PENEVVKKLKFMHEREIIDYEPRKSKPQLTFLTPRYDATLLPLNVFEINKKKERDIKKAR
AVAHYASHTRICRTLLLLEYFNEFDAEACGVCDICIQNKKNELAQNPGLETTLTNFLAQN
GPVTPNELGIAFEDIPEKDFLQTLQQLIKEETIRYDDAGKLSLTNKTQH
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcttcacgctatcctgaagcaatactggggttacgacaccttccgccctttt
caggaggatgcgatcaaaacagttcttaatggcatcgatacgctggttctgctcccgaca
ggcggcggcaagtctgtgtgttttcaggtgcccgtgcttgcaatggaaggcgtttgcatt
gtggttacgccgctgatcgcattgatgaaagatcaggtggagcagttgaaacgccggtcc
atttttgcggctgcaatacattccggcatgagcaagaatgagatcgatataacgctcgac
aattgcatacacggtaatacaaaatttttatacgtctctcccgaaaggttacggaccgac
attatggttgcccgggtgaaacaaatgaatgtttgcctgcttgccattgatgaggcgcat
tgcatttctgcctggggctatgacttccggccggcctaccttttaatttcagatttccgg
aaaataatcgccggagttccatcgcccgctggaaaacgtcaggatgttcctctaatggcg
cttactgcaactgcgaccgaagaagtaagggccgacattcttgaaaaacttgaaatgcgc
aatgcgcgggttttcaaacaatctttcgcccgggcaaacctctcttactcagcattttcc
gaggaaaataaagagcgcaagctgctgcaaatcctgaaaaacgtagccggaacagccatc
gtatacgtgcggacacgaaagcgcacgaaggaactggccgattggcttaacagacaaggc
atcagcgcacagaattaccacgcaggactgcccttccgcgagcgaagcgaccgtcagacg
gcttggatcaaaaaccaggtaagggttgtggttgctaccaatgcattcgggatgggcatt
gacaagccggatgtgcgcgcagtggttcattttgatctgccggataacctcgaagcctat
tatcaggaagctgggcgtgctggccgcgacgaacaaaaagcttacgctgttgcattgttt
acgaagatcgacctggaagagctttctgaaagtgtagaaaggaaatacccgccgatagaa
gtcctgaaaagggtttaccaggcacttgccaattattacaaacttgcagttggtggaggt
gaatttgccagttttgattttgatatacaggagtttaccggagtttttggccttgccgta
aatgaaacgcattatgctttaaaactgctcgaagaagaaggtttcctgcaactgagcgaa
agttttaatgacgcgtcaaaaattcattttctcgttgataatcgccaattatacgatttt
cagatacgttaccaggaaatggattcgtttatcaaggtaattctgaggatgtatggcggg
gaactgtttacggaatatgtgcggatctctgaaaacgagctgggccaggtttattttgcg
ccggaaaatgaggttgtgaagaaattgaaattcatgcacgaacgcgaaattatcgactat
gaaccgcggaaaagcaaaccgcaactcactttcctcacgccccggtatgatgcaacatta
ttaccgcttaacgtttttgaaataaataagaaaaaagagcgggacattaaaaaagcgcgc
gctgtggcacattatgcatcccacacgcgcatttgccggactttgcttttattagaatat
ttcaatgaatttgatgcggaagcatgtggagtttgtgacatttgcattcaaaacaagaaa
aacgaactggctcaaaaccccggactggaaactacgttaaccaattttttggcacaaaat
ggcccggtaacacccaatgagctaggcatagcatttgaagacattcctgaaaaggatttt
ttacagacattacaacaattgatcaaagaggaaacgatccggtatgatgatgccgggaag
ctatccctgactaacaaaactcaacattga
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