Dyella sp. M7H15-1: EO087_00725
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Entry
EO087_00725 CDS
T05846
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dye
Dyella sp. M7H15-1
Pathway
dye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EO087_00725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dye03019
]
EO087_00725
03009 Ribosome biogenesis [BR:
dye03009
]
EO087_00725
Enzymes [BR:
dye01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EO087_00725
Messenger RNA biogenesis [BR:
dye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EO087_00725
Ribosome biogenesis [BR:
dye03009
]
Prokaryotic type
rRNA processing factors
EO087_00725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QAU22684
UniProt:
A0A410UEM3
LinkDB
All DBs
Position
complement(116312..119464)
Genome browser
AA seq
1050 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEQSLEACFVDY
GAERHGFLPLKEIAREYFTSGLDPYKSNIRELLREGQEVVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALEHLTVPDDMGLIVRTAGMGRDAEELQ
WDLDYLIQLWKAISGAAQAQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLYHDAR
EFMQQVMPNALRKLKLYKDDTPLFSRYQIETQIESAFDRSVRLPSGGSIVIDQTEALTAI
DINSSKATKGGDIEETAFNTNLEAAAEIARQLRIRDAGGLIVIDFIDMDSPKHQREVEER
LKDASKLDRARIQIGRLSRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHIRSVESLSLS
TLRLIEEHAMKDNTGQVLVQTPPSVANFMLNEKRASVVEIELRNKVHVVIVADDKLETPH
IEIQRIREADMGEHSKPSYERITAEEPSAIRKMGQVLGSSEQPAVSGIVPASPAPVREEE
PAATTAPAQVAKRQPMAAPMATPVSNVGFFSRIVGFFRGNSAAEPAPAPAPAARQEASRG
KPQQDRRNERHRTDGQQRQSQQRETRSNQPQQQGKNPNQQQRQRNEQQQAQNRQPQPSQQ
QSNKQEQRQPKPAAQTSEAVANEQRNKQQSAPVAKQLPSQERQQRQPQTEPPQRQPAADA
PTAAKPVEAPKSVNKPASNLAGVVAEGVDAAANETAESNQSRRRRGRRGGRRRRRNDGTA
TGAVSNEQVSETLDDEDRDEDVASELTQAPQAKSEAIAALTQHAPSTEMQAQKPAPKAPA
PIEAVSPSANETAEQAAVKPPVVPVEITRTDVASSEIHQVSVADEQAAIPLIIAPAPVAA
SFNLPVLPPIPMREAAQASRAPESNAVDEPKTEVPVAPAETVTVTVSHDVAPATNETNVA
APIDSVSIAATVTSQSTEPASEQAVPVQTPAPIVITPTPLFHQPEQGDLLSQPMRQHAAA
APEHGVEDAKEPSSPDKDDTLQTQRNNQSS
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgcaactcagcgtgaagagttgcgtgtggctatcgtggat
ggtcaaaccctttacgatctcgatatcgaaattccctcccgcgaacagaaaaaggccaac
atctacaaaggccgtatcacgcgcgttgagcaatccctggaagcctgctttgtcgactat
ggcgccgaacgccatggcttcctccccctgaaggaaatcgcccgcgaatatttcacgtcg
gggcttgatccttacaagtccaatattcgcgaactgctgagggaaggccaagaagtcgtt
gtccaggtcgagaaagaagaacgcggcaacaagggcgctgccctcaccaccttcatcagc
ctggccggccgctacatggtgctgatgccgaacaacccgaaagccggcggcgtgtcccgt
cgcatcgagggtgaagatcggcaggcgctgaaggaagcgctggagcacctcaccgttccg
gacgacatgggcctgatcgtgcgtaccgccggcatgggccgcgacgccgaagagctgcag
tgggacctcgattacctgatccagttatggaaggcgatctccggtgcggcccaggcgcag
aaggcgccgttcctgatttaccaggaatcgaagctgttcatccgtgccctgcgcgactac
ctgcgcaacgacatcggcgagatcctgatcgacgaggagtcgctctaccacgacgcccgc
gagttcatgcagcaggtgatgcccaacgccctgcgcaagctcaagctctataaagacgat
accccgctgttctcgcgctaccagatcgaaacccagatcgagagcgctttcgatcgcagc
gtgcgcctgccctccggcggttcgatcgtgatcgatcagaccgaagcgctaaccgccatc
gacatcaactcctccaaggccaccaagggcggcgacatcgaggagaccgcgttcaacacc
aacttggaagcagcggccgagatcgcccgccagttgcgcatccgcgatgctggcggcctg
atcgtgatcgacttcatcgacatggacagccccaagcatcagcgggaagtcgaagagcgc
ctgaaggatgcctccaagctagaccgcgcacgcatccagatcggtcgcctttcacgcttc
ggcctactggagatgtcgcgccagcgcctgcgcccgtcactgggcgaagccacccagatc
gtctgcccgcgctgtgaaggccacggccatatccgcagcgtagaatcgctatcgctctcg
accctgcgcctgatcgaagagcacgctatgaaggacaacactggccaggtgctggtgcag
accccgcccagcgtggccaacttcatgctcaacgaaaagcgcgccagcgtggttgagata
gaactgcgcaacaaggtgcacgtggtgattgtggcggacgacaagctcgaaacaccgcac
atcgagatccagcgcatccgcgaagcggatatgggtgagcacagcaaacccagttacgag
cgcatcaccgccgaagaacccagcgccatccgcaagatgggccaggtgctgggtagcagc
gaacagcctgccgtcagcggtatcgtgccggccagcccagcaccagtgcgggaggaagaa
cctgccgccacgacggctccagcccaggtcgcaaagcgccaaccgatggcagctcccatg
gctacgccggtcagcaatgttggtttcttctctcgcatcgtcggtttcttccgcggcaac
agtgccgccgagccagctccggctccagctccagcagcgcgccaggaagcatcgcgcggc
aagccgcagcaagatcgtcgcaacgagcgccatcgcacagacggccaacagcgccagagt
cagcagcgcgagacacgcagcaatcagcctcaacagcaaggcaagaacccgaatcagcag
caacggcaacgtaacgagcagcagcaggcgcagaaccgccagccgcaaccgtcgcaacag
caaagtaacaagcaggaacaacgccaacccaagccggcagctcaaaccagtgaagccgtg
gctaatgaacagcgtaacaagcagcagagtgcgccggtcgccaagcaactgccgtcgcag
gaacgccagcagcgccagccgcagaccgaacctcctcagcggcagccagccgccgacgca
ccgacggccgccaagcccgtggaagcgccaaagtcagtcaacaaacctgccagcaacctc
gcaggcgtagtcgctgaaggggtcgacgcagctgccaatgaaaccgcagagagcaaccag
tcgcgtcgccgccgtggtcgccgcggtggccgtcgtcgtcgccgtaatgacggtaccgcc
acaggcgcggtctcgaacgagcaggtgagcgagacattggatgacgaggatcgcgacgaa
gacgttgcatccgaactcacccaggcgccgcaagccaagtccgaagccatcgctgcgcta
acacagcacgctccatcgactgaaatgcaagcacagaagccggcgcccaaagcacccgcc
ccgatcgaggccgtttcgcccagcgccaatgaaacggcagagcaggcagcagtcaagccg
cctgtcgttccggtcgagataaccaggaccgatgtcgcatccagtgaaatccaccaagta
tccgtagcggatgagcaagctgcgataccgctgattatcgcccccgcacctgtggcggca
tcgttcaacctgcctgtgttgccaccgattccgatgcgcgaagctgcccaagccagccgc
gctcctgaaagcaatgctgtcgatgagccaaaaaccgaagtgcctgttgctccggctgag
accgtgacggttacggtctcccatgacgtcgcacccgccaccaatgaaacgaatgtcgct
gcacccatcgactccgtctcaatagcagccacagtaacatcgcagtccaccgagccggcc
agcgagcaagccgtgcctgtgcaaacacccgctccaattgtgatcacaccaacaccgctg
tttcatcagcctgagcaaggtgatctgctttcccagcccatgcgccaacacgcagcagcc
gcgccagagcatggcgttgaagacgctaaagaaccgtcttcgcccgataaagatgacacg
ctccagacacagcgcaataaccagtcgtcctga
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