Dyella sp. M7H15-1: EO087_03320
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Entry
EO087_03320 CDS
T05846
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dye
Dyella sp. M7H15-1
Pathway
dye03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EO087_03320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dye03400
]
EO087_03320
Enzymes [BR:
dye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EO087_03320
DNA repair and recombination proteins [BR:
dye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EO087_03320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_30
Glyco_tran_WecG
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QAU23137
UniProt:
A0A410UFQ5
LinkDB
All DBs
Position
complement(661813..665265)
Genome browser
AA seq
1150 aa
AA seq
DB search
MQTTQISHPPLPTTPKQRRFWTPPHGSARALLIAEAAKSHDGLLVVVTRDTQRAHALEDE
LRIFAGSLPVLHFPDWETLPYDVFSPHPDIVSQRIATLYQLPGVKRGVLVVSAATLMQRI
APRTHITGSGLMLHKGQKLDLASEQRRLEASGYRHVPQVAEPGDFAVRGALIDIFPMGAR
EPYRIELFDDEVESIRSFDPETQRSQQQVEKVALLPAREFPVSDDAAKAFRSCLRERFPI
DVRRCPLYQDMKEGVTPGGIEYYLPLFFDKTATLFDYLADDALFVLGEGTGEASEQFWAQ
TAERYDQRTHDIERPALPPTELYLSPEQWREQLNKRLRVEMVDSSHEHAIAAGTQPAPDV
PLNRKGEEPGASLRHFIEHYPGRVLIAADSAGRREALLEQLAATGLRPQNVDHWQAFLAD
TRPLTITIAPLEQGFALTQPAMTVLTERELFGERVRTERKRRRSATRDPDTIIRDLTELS
IGSPIVHVDHGVGRYQGLVSMELGGMAGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPE
LAPLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQREARGGESLPIDRQLVEEFGGSFP
FEETPDQLHAIDAVLGDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAVLVPT
TLLAQQHYRNFADRFADWPVRVDVLSRFRSTKEVNEALKRLSNGHIDVIVGTHKLLQPDI
KFKQLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLITT
PPAHRMAVRTFISTWEPALIREAFQRELQRGGQVYVLHNEVESIERTAREVQELIPDARI
GIAHGQMPERELEQVMADFHRQRFNVLVCTTIIETGIDIPTANTIIINRADRFGLAQLHQ
LRGRVGRSHHRAYAYLIVPDRKSITADAEKRLEALASLEELGAGFTLATHDLEIRGAGEL
LGDEQSGQIQEIGFGLYTELLERAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLP
DVHTRLTLYKRIASARDEESLRELQVEMIDRFGLLPNAVKQLFAVASLKLMATPLGIRKL
DVGANGGRVTFRDKPDVDPMAIIRLIQNYPRVYKLDGKDKLKVNLELPGASERIRAAEEI
LGKLGARKAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccacccagatcagtcacccgcctcttcccaccacccccaagcaacgccgcttc
tggaccccaccacacggttcggcgcgagccctgctgatagccgaagccgccaaatcgcac
gatgggctgctggtggtcgtcacccgggacacccagcgtgcccatgctctggaagatgag
ctgcggattttcgcaggctcgctgccggtgctgcatttccccgactgggaaaccctgccc
tacgacgtcttcagcccgcatccggatatcgtctcgcaacgcatcgccacgctgtatcag
ttgccgggcgtaaagcgcggcgtgctggtggtatcggctgccaccttgatgcaacgcatt
gcgccacgcacgcacatcaccggttccggcctgatgttgcacaaggggcaaaagctggat
ctcgcttccgaacagcgccggctggaagcctccggctatcgccatgtgccgcaggtcgcc
gaacccggcgatttcgcggtgcgtggtgcactgatcgacatcttcccgatgggtgcgcgc
gaaccttatcgcatcgagctgttcgatgacgaagtagaatcgatccgcagcttcgatcca
gaaacgcaacgctcacagcagcaagtggaaaaagtagcattgctgccggcgcgcgaattc
cccgtcagtgacgacgcggccaaggccttccgcagttgcctgcgcgaacgcttcccgatc
gatgtgcgccgctgcccgctctatcaggatatgaaggaaggtgtgacgccgggcggcatc
gagtattacctgccgctgttcttcgacaagaccgccacgctgttcgattacctcgccgat
gatgcactgttcgtgctgggtgaaggtaccggcgaagcgtcggaacagttttgggcgcag
acggccgaacgctacgaccagcgcacacacgatatcgagcgcccggcgctgccgccgacc
gagttgtatctgtcgcctgagcaatggcgcgaacagctcaacaagcgcttacgcgtggaa
atggtcgacagcagccacgaacacgccatcgcagcgggcacgcagccggcgccggacgta
ccgctcaatcgcaagggcgaagaaccaggtgcctcgctgcggcacttcatcgagcattat
ccgggccgcgtactgattgccgccgactcggcgggacgtcgcgaggcgttgctggaacaa
ctggccgctaccggcctgcgcccgcagaacgtcgatcattggcaagccttcctcgccgat
acccgtccgctcaccatcaccatcgcgccgctggaacaaggcttcgccctgacccaacca
gcgatgacggtactgactgaacgcgaattgttcggcgaacgcgtgcgcaccgagcgcaag
cgtcgacgcagcgcgacgcgcgatccggacaccattatccgcgatctgacggaactctcg
atcggctcgccgatcgtgcacgtcgatcacggtgtgggccgctaccagggcctggtatcg
atggaactgggtggtatggccggcgagttcctgaccattgaatacgccaagggcgacaag
ctctacgtgccagtagcccaactcggcctggtcagtcgctactctggcaccgcaccggag
ctggcaccgttgcattcgctgggtggcgatgcgtgggaacgcgcacgtaagaaagccgcc
gagaaagtgcgcgacgtcgccgccgagttgttggcgatctacgcacaacgcgaggcacgc
ggcggcgagtcgctgccgatcgatcgccaactggtagaagaattcggcggcagtttcccg
ttcgaggaaaccccggatcagttgcacgctattgatgccgtgctcggcgatctagccgcg
ccgcgtgcgatggatcgcgtgatctgcggcgacgttggcttcggcaagaccgaagtcgcg
ttgcgcgccgcctttgccgctgccacggcaggcaaacaggtggcggtactggtacccacc
accctgctcgcccagcagcactaccgcaatttcgccgaccgcttcgccgattggccggtg
cgtgtggatgtgctatcccgtttccgctccaccaaagaagtgaacgaagcactcaagcgc
ctgtccaacggacacatcgacgtgatcgtgggcacgcacaagctattgcagccggacatc
aagttcaaacagcttggcctggtgatcgtggatgaagagcagcgtttcggcgtgcgtcag
aaagaacaactcaagaaactgcgcgccgaggtcgatctgctgaccatgaccgccacgccg
attccgcgcacgctcaacatggcaatgagcggcctgcgcgatctttcgctgatcaccacg
ccaccggcgcaccgcatggcggtacgcacgttcatttccacctgggaaccagcactgatc
cgcgaagccttccagcgcgagctgcaacgcggtggccaggtgtatgtgctgcacaacgaa
gtggaaagcatcgagcgcaccgcgcgcgaagtgcaggagctgatccccgatgcacgcatc
gggatcgcccatggccagatgccggaacgcgagctggaacaggtgatggccgacttccat
cgccagcgtttcaacgtgctggtgtgcaccacgattatcgaaaccggcatcgacattcca
accgccaacaccatcatcatcaaccgtgccgatcgtttcggcctggcacagttacaccag
ctacgcggccgcgtgggtcgttcgcaccatcgtgcttatgcgtacctgatcgtgcccgat
cgcaagagcatcacggccgacgcggaaaaacgactggaagcgctggcctcgctggaagaa
ctgggcgccggctttacgctggccacgcacgacctggaaattcgcggtgccggtgaattg
ctcggtgatgagcagtctggccagatccaggaaatcggcttcggtctttatacggaactg
ctggaacgcgccgtgcgcgcactcaaatccggcaaggtgcccgatttcgacctgagcagc
gagcatgaaaccgaagtggaactgcatctgcctgcgctgattcccgatgattacctgcct
gacgtgcatacacgcctgaccttgtacaagcgtattgccagcgcccgcgacgaggagtca
ctgcgcgaattgcaggtggaaatgatcgaccgcttcggcctgctgccaaatgcagtcaag
caactgtttgccgtggccagcctcaaactgatggcaaccccgctgggcatccgcaagctc
gacgtcggcgccaacggcggacgcgtcaccttccgcgacaagccggatgtcgatccgatg
gcaatcattcgcctgattcagaactatccacgtgtttacaagctggacggaaaggacaag
ttgaaggtgaatctggagttgccaggggccagcgagcggattcgcgcggcggaagaaatt
ttaggcaaacttggtgcacgcaaggccgcataa
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