Dyella sp. M7H15-1: EO087_11015
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Entry
EO087_11015 CDS
T05846
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dye
Dyella sp. M7H15-1
Brite
KEGG Orthology (KO) [BR:
dye00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dye03019
]
EO087_11015 (hrpB)
Enzymes [BR:
dye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EO087_11015 (hrpB)
Messenger RNA biogenesis [BR:
dye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EO087_11015 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
HA2_N
DEAD
CON_HrpB
TP_methylase
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QAU25485
UniProt:
A0A410UMK7
LinkDB
All DBs
Position
complement(2371646..2374147)
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AA seq
833 aa
AA seq
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MNAPMFPITPLLPDIRAALAARPRLVLEAPPGAGKTTQVPLALREAPWLAGRKIVMLEPR
RIAARAAAQFMAQQLGEPIGQTVGYRIRFESRVSAATCIEVVTEGILTRLIQDDPELSGI
GAILFDEFHERHLAGDLGAALALDIQATLRPDLRIAIMSATLDGERIAQWLDAPRISSPG
CSFPVRVDYPPARTQESVEHHLARVVKQALDENAGDVLVFLPGRREIARVQSLLTQTLPD
DVERVALHGELSLAEQQLALAPADQGMRRVVLATNVAESSVTLPGIRAVVDTGLAREPRF
DPNSGFTRLETVTISQASADQRAGRAGRVAEGTAYRLWPQSRRLDPSRSAEIAQAELSGL
VLELVAWGSAELPWLDAPPTGALAQARELLTRLGALDVQQRITPLGRRMLELGATPRLGA
AAMRAPETLHALIADLLALMEARSPMRGEQARSDDFRLRVNALHAWRDRRSATGHHGGAD
AGALAAIEQTSKGWRRRLNVRNAASGVPHSHAIGDVLLHAFPDRIARKDDTHPLRYTLAN
GRGARLHEQTALLGESWLVVLDLRHEARDSLILSAAPLDPRVLEEDYPDQFQRARHMRWS
DERAAVEAFEEYRFGAIVLERRSVPVQAEDAMPALLAAIRSRGLDALPWSEAARRLRMRM
QSLREWMPELGLPDVSDAYLLDTLQDWLAPYLQGKHKLDALSQDDLSQALSALFNYEQRK
QLDAQVPDSLTVPSGQTRRLEYHPGEAPVLAVKLQELFGLADTPSVAGGRIPVTLHLLSP
AGRPIQVTQDLKGFWERTYPEVKKELKGRYPKHPWPDDPWTATPTHRAKPRGT
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgccgatgttcccgatcactcccttgctgccggatatccgcgccgcactggcc
gcgcgcccccgcctggtactggaggcgccacctggcgctggcaaaaccacccaagtgccg
ctggccttgcgcgaagcaccttggctggcgggaagaaagatcgtaatgctggagccgcgg
cgcatcgcggcgcgcgcggcagcgcagttcatggcgcagcagttgggtgagccgatcggg
cagacggtgggctatcgcattcgcttcgaatcgagagtcagcgcagctacgtgtatcgaa
gtggtgaccgaaggcattcttacgcgcttgattcaggatgatccggagctgtctggtatc
ggcgcgatcctgttcgatgaatttcacgagcggcatcttgcgggagatctcggcgcggcg
ctggcactggatatccaggccacgctgcggccggatctgcgcatcgcgatcatgtccgcc
acgttggatggcgaacgtatcgcgcaatggctggacgcgccgcgcatcagtagtccaggg
tgtagttttccggtgcgtgtcgactatccgccagcgcgcacacaagaaagcgtggagcat
catcttgcgcgcgtagtaaagcaggcattggatgaaaatgccggtgacgtactggtcttt
ctgccggggcggcgtgaaatcgctcgcgtgcaaagcttgctcacgcaaaccttgccggat
gatgtagaacgggtggccttgcatggcgagctgtcactggccgagcaacagctcgcactg
gctccagccgatcaaggcatgcgccgcgtggtgctggcgaccaacgtggctgaatccagc
gtcacgttgccgggcattcgggcagtcgtcgatacaggtttggcgcgggaaccgcggttc
gatcccaactcggggtttacccgcctggagacggtaaccatttcgcaagcctcggcggac
caacgcgccggccgtgccggtcgcgtggccgaaggcacggcgtatcgcttgtggccgcag
agccggcggcttgatccctcgcgctcggcagaaatcgcgcaggcggaactgtctgggctt
gtgctggaattggttgcgtggggcagcgccgaactaccttggctggacgcaccgcccacc
ggtgccttggcgcaggcgcgagaactgctgacgcgcctcggcgcactggatgtgcagcag
cgcatcacaccattagggcgacgcatgcttgagcttggcgcgacaccgcgtctgggcgca
gcagccatgcgcgcaccggaaaccttgcatgcgttgatcgccgacttgctcgccttgatg
gaagcacgctcacctatgcgcggcgagcaggcacgcagcgacgattttcgcctgcgcgtg
aatgcgctgcacgcctggcgtgaccgacgcagtgccacaggacatcatggcggcgccgat
gccggagcgctggcagccatcgagcagaccagcaaaggttggcgtcgccgtttgaatgtg
cgcaatgccgcgagcggggtgcctcacagtcacgcgatcggcgatgtgctgttgcatgcc
tttcctgatcgcattgcgcgaaaggacgacacccatcccttgcgctacaccctggccaat
ggccgtggtgcgcgtttgcacgaacagaccgccctgctgggtgagtcatggctggtggtg
ctggatctgcgacatgaagcgcgcgacagtctaatcctttccgccgcgccactcgacccg
cgtgtgctggaagaggattacccggatcaattccagcgtgcccgccatatgcgctggagc
gacgaacgtgccgccgtggaggcgtttgaagaataccgtttcggcgcgattgtactcgaa
cgccgtagcgtacccgtgcaagccgaagatgctatgccagcgctgttggcagctatccgc
agtcgtggattggatgccttgccatggagtgaagcagcacggcgtttgcgcatgcgcatg
cagtccttgcgcgagtggatgccggagctgggcctgcctgatgtgtccgatgcctatctg
ctcgataccctgcaggactggcttgcaccttacctgcaaggcaagcacaagctcgatgcg
ttgtctcaagatgatctgtcacaggcactgtcagctttgttcaactacgagcagcgcaaa
caactcgatgcccaggtgccagacagcctgacggttccaagtgggcagacgcgccggctt
gaataccatccgggtgaggcaccggtgcttgccgtgaaattgcaggaactgttcggcctt
gccgacacaccgtcggtggcgggtggccgtattccggtcaccctgcatctgctgtcgcca
gcagggcgtcccatccaggtcacgcaggatctgaaaggtttttgggaacgcacttatccg
gaagtgaaaaaggaattgaaggggcgctatcccaagcatccttggccggatgatccgtgg
acggccacgcctacgcatcgtgctaaaccgcgcggcacctaa
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