Dyella sp. M7H15-1: EO087_15660
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Entry
EO087_15660 CDS
T05846
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dye
Dyella sp. M7H15-1
Brite
KEGG Orthology (KO) [BR:
dye00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dye03019
]
EO087_15660 (hrpA)
Enzymes [BR:
dye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EO087_15660 (hrpA)
Messenger RNA biogenesis [BR:
dye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EO087_15660 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
AAA_22
HA2_C
WHD_HA2
nSTAND3
AAA_19
AAA_25
NACHT
SRP54
AAA_30
nSTAND_NTPase5
PhoH
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QAU25246
LinkDB
All DBs
Position
3417499..3421557
Genome browser
AA seq
1352 aa
AA seq
DB search
MNDAKPDTSPVSPDSRLRVLRKLLDTVSSRDFGRLLGRWSGLLRRPDAKKLEALAVDIAA
SAERRQRRVQNKPAIRLDKSLPITVRADEIVKLIREHQVVVIAGETGSGKTTQLPKLCLA
AGRGEAGLIGCTQPRRLAARSVARRVAEELGTQLGDKVGFQVRFNDQVSEQSLIKFMTDG
ILLAETQGDPWLSTYDTLIIDEAHERSLNIDFLLGYLRRLAAKRPELKIIVTSATIDTAR
FAEHFGGAPVVSVEGRTYPVEVRWRPTDDVAARRNQRRSEMQQGSAEHVAAVLDDITHDD
PRGDVLVFMPGEREIRDTHLLLSRRQYRETEILPLYARLSAGDQDRVFKPGVKRRVVLAT
NVAETSLTVPRIRYVIDTGTARVKRYSQRSQLERLHVEPISQAAADQRKGRCGRVGPGIC
YRLYDEADYTSRAAYTDPELLRSSLANVILRMLSLQLGKVDEFPFLESPDPRVVADGYRR
LTEISAIDERRQLTTVGRTLARLPIDVQLARMLVEAEKLGSLRELLVIVSFLSIQDPRER
PADARQQADQAHAAFADPKSDLVGVLNLWREYDHAHEELTQSKLRDWCSRHFLSFLRMRE
WRELHRQLLLVLDDAGLGTQAPGRGPKAGKPADATKIQASEAKRNLRRAASPSPESRVPS
PDDKYEAIHCSLLAGLPTQVGHKDEKGIFRGTRERRFQVFPGSALAKTPPNWIFAAQILD
IGGRVWGMMCARIEPLWIEQQAAHLLRSTCRDAHWSRKRGTVVAYEQASLFGLVLVERRA
VTFQKQDSTLAHDIFLREALARCDIDARADFVRANQRVLEDAQGIEARQRREGLIRHDDE
LVDFFRGKLPEDIASSRALDAWYRNTRPAEQAALRWSIDDVMVGGTGLDPKAFPASLEIP
ITMEDRVPHAQERPQRYRLEYRFVPGDDADGVTLHLPLAMLNALPTARCEWLVRGLLGEK
VAELIRGLPKALRRNFVPAPDFARAFVEAESPRDESLAKVLAMFLRRTMGVDIDANDFAP
IERAPHFSMRYRLHDEKGRTLATGRDLSVLRGQWAGQAREAFSRKTDIELTREDVTSWDF
DEIPEQVRSAGGLLAFPALVDLGDAVALRVFERRDEAGAAHTKGVERLLRNALASDLKQA
RRRLPIANALSLKYAPLGSVDGLREDLVEGGFADLLAVQDLHARSAATFDVLRTHAAREL
FASAVERLKLAEPIIEAQADLKPWLQPPLMGFARASYDDLGEQLEAMLAPGFLRELSTAR
LSHFPRYLKAMRLRAERLRQDPTKDQQRMLQVLPYWREYLNHCAAGDVGLDELRWLIEEW
RVSLFAQELKTPEPVSAKRLAKALEEIRSTHR
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgcgaagcccgatacttcccccgtttccccggacagccgtctgcgcgtgctg
cgcaagttgctggataccgtttccagtcgcgattttggacgcctgctggggcgttggagt
ggtcttttgcggcggccggatgcgaagaaactcgaagcgctggccgtcgatattgccgct
tccgccgagcggcggcagcgtcgtgtgcaaaacaagccggcgatccggctggacaaatcg
ctgccgatcacggtacgggcggacgagatcgtcaagctgatccgcgaacatcaggtggtg
gtgatcgccggcgaaaccgggtctggcaaaaccacccagctacctaagctgtgcctggcg
gcagggcgcggcgaggctggcctgatcggttgcacgcaaccgcgtcggttggccgcgcgt
tcggtggcgcgtcgcgtggcggaggaattgggcacgcaattgggcgacaaggtcggcttt
caggtgcgcttcaacgatcaggtctccgagcagagcctgatcaagttcatgaccgacggc
attctgctggccgaaacccaaggtgatccatggctgtcgacctatgacaccctgatcatc
gacgaggcgcacgaacgcagcctcaacatcgatttcctgcttgggtacctcaggcgattg
gcggcgaagcggccggagctgaagatcatcgttacctcggccaccattgataccgcgcgt
tttgccgagcacttcggcggcgcgccggtggtgtcggtggaagggcgcacctatccggtg
gaagtacgctggcgcccgacggacgacgttgccgcgcggcgcaatcagcgccgtagcgag
atgcaacagggcagcgccgagcatgttgccgctgtgctggacgacatcacgcatgacgat
ccgcgcggtgacgtgttggttttcatgccgggtgagcgcgagatccgcgacacgcatttg
ctgctttcgcgccggcagtatcgtgaaacggaaatcctgcccttgtatgcgcgcctctcg
gcgggcgatcaggatcgggtcttcaagcccggcgtcaagcgtcgcgtggtattggccacc
aacgtggcggaaacatcgctgactgtaccgcgcatccgttacgtgatcgacaccggtacg
gcacgcgtgaagcgttacagccagcgcagccagcttgagcgcttgcatgtggagccgata
tcgcaggcggctgccgatcaacgcaaagggcgttgcggacgagtcggtcctggcatctgc
tatcgcctgtatgacgaagccgactacacctcgcgtgcggcctacaccgatccggaatta
ctgcgctcctcgctggccaatgtcatcctgcgcatgctgtcgttgcagttgggcaaggtg
gacgaattcccgtttctagaatcgcccgatccacgcgtggtggctgatggctatcgccgc
ctgacggaaatcagcgcgatcgacgagcgacgccagctcaccacggtgggtcgtacgctg
gcgcgcctgccgatcgatgtgcaacttgcgcgcatgctggtcgaagccgaaaaactcggc
agtctgcgtgagctgctggtgatcgtgtctttcctcagcatccaggatccgcgcgagcgt
ccggccgatgcgcggcagcaggccgaccaggcgcatgccgcttttgccgatcccaagtcc
gatctggttggcgtgttgaatctgtggcgcgagtacgaccatgcgcatgaggaactgacg
cagtcgaaattgcgcgattggtgctcgcggcattttctgagttttttgcgcatgcgcgaa
tggagggagctgcatcggcagttgttgctggtgctggatgatgcgggattggggactcaa
gcgccgggacgcgggccaaaagctggcaagccagccgatgcgacgaagatccaagctagt
gaggccaagcgcaacttgcggagagctgcttctccgagtcccgagtcccgagtcccgagt
cccgacgataaatacgaagccatccattgcagcctgctggctggtctccctacgcaggtc
ggccacaaagacgaaaagggtattttccgcggcacgcgcgaacgccgcttccaggtgttc
ccgggttctgcgttggccaagacgccaccaaactggattttcgccgcgcagatcctcgat
atcggtggtcgcgtgtggggcatgatgtgcgcacgtatcgaacccttgtggatcgagcaa
caggccgcgcaccttttgcgcagcacttgtcgcgatgcgcattggtcgcgcaagcgtggc
actgtggtcgcttacgaacaggcgagtctgtttgggctggtgttggtggagcgccgggcg
gtgacgttccagaaacaggattccacacttgcgcatgacattttcctgcgcgaggcgctt
gcacgttgcgatatcgacgcgcgcgccgattttgtccgcgccaatcagcgcgtgctggag
gatgcgcagggcatcgaggcgcgccagcgccgcgagggtctgattcgtcatgacgacgaa
ctggtggatttcttccgaggcaaactgccggaagatatcgcgagcagccgtgcgctggat
gcgtggtatcggaatacgcgacccgccgaacaggccgcactgcgctggtcgatcgacgat
gtgatggtgggtggaacagggctggatcccaaggcgttccctgcgtcgctggagatcccg
ataaccatggaagatcgagtgccacacgcgcaggagcggccgcaacgttatcgtctggag
taccgttttgtaccgggtgatgacgccgacggcgtgacccttcatttgccgctagccatg
ctcaatgcgctacccaccgcacgctgtgaatggctggtgcgcggattgctcggtgaaaaa
gtcgcggagctgatccgcggcctgcccaaggctttgcgtcgcaactttgtgcccgcgccg
gattttgcgcgcgcttttgtcgaagccgaatcgccgcgcgacgaatcattggccaaagta
ctggccatgttccttcgccgcacgatgggtgtggacatcgatgcgaatgactttgcgccg
atcgaacgggctccgcatttttccatgcgctatcgcctgcatgacgagaaagggcgcacg
ctggcgaccgggcgcgatctttccgtgctgcgcggacaatgggcggggcaggcgcgcgaa
gccttctcccgcaaaaccgatatcgaacttacccgcgaagacgttacgagttgggatttc
gacgagattcccgagcaggtgagatcggcaggcggtttacttgctttcccagcactggtc
gatcttggtgatgcggtggcgctgcgtgttttcgagcgtcgcgacgaggctggagctgca
cataccaaaggcgttgagcgtttgctgcgcaacgcgttggccagtgacctgaagcaggcg
cgtcggcgtttgccgatcgccaacgccctgtcactgaagtatgcgccgctcggcagcgtg
gatggcctgcgcgaggatctggtcgaaggcggtttcgctgatctgctcgccgtgcaggat
ctgcacgcacgcagtgccgccaccttcgacgtactgcgcacgcatgcggcgcgtgaattg
ttcgcttcggcggtggagcgcttgaagctggccgagccgattatcgaggcacaggccgat
ctgaagccctggctgcaaccaccgctgatggggtttgcgcgagccagctatgacgatctt
ggcgaacagctcgaagccatgcttgcgcctggtttcttgcgtgaactgtcgacagcacgg
ctgtcgcatttccctcgctatctgaaagcgatgcgcttgcgcgccgaacgcctgcgccag
gatcccaccaaggaccagcaacgcatgttgcaggtgctgccttattggcgggaatacctc
aatcattgcgcggcaggcgatgtcgggttggatgagctgcgctggctgatcgaggaatgg
cgtgtatcgttgttcgcgcaggaactgaagacacctgaaccggtgtcggccaagcgcctg
gcgaaggcgctggaagagatcaggtccacccatcgatag
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