Dyella sp. GSA-30: DYGSA30_02490
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Entry
DYGSA30_02490 CDS
T10269
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03018
RNA degradation
Brite
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DYGSA30_02490 (rhlB)
Messenger RNA biogenesis [BR:
dyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DYGSA30_02490 (rhlB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDU18792
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All DBs
Position
complement(276297..278021)
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AA seq
574 aa
AA seq
DB search
MSQTVLTDTFFTNFDLHPLLQQGLDESGFTRCTPIQALTLPMALAGRDVAGQAQTGTGKT
CAFLVAMMNRLLTRPAVAERKDSDPRALVIAPTRELAIQIEKDAKAIGRHTGLRTALIYG
GVDYDKQRQQLKDGCDIIIATPGRLLDYYKQQVFGFNGVEVMVIDEADRMFDLGFIKDVR
FIFRRLPAREQRQVLLFSATLSHRVLELAYEHMHNAEKLAVETENVTADRVRQQVFFPSK
EEKMPLLLNLLERTSAERSIIFVNTKAAAERVTDRVKRQGYRVGALSGDVPQLKRQKLLQ
RFQEGQLDMLVCTDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMSLPDIETYIGQRIPVAAIDPELLVMPKPKQIDEQFVAHAAADSAEFGDKVIARE
KKDSGGPGGRSRREGGRGGDSRKPRDGERRERTERKPAAAPATVAPVAAPAGDAASVAGE
AERKRRRRRGGRGRRREGDAAQVQNSNGSAAAAPSERNNDRPRGERRPPRNGGEQAGNGR
SRQVVATAAAHAGEHTAPKKPGFFRRLTRLFTGR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaaccgtactcactgatacctttttcaccaatttcgaccttcatcctctactg
cagcagggcctggacgaatccggttttacccgctgcaccccgatccaggcattgaccctg
ccgatggccctggccggccgcgacgtcgcgggccaggcccagaccggtaccggcaagacc
tgcgccttcctggtggcgatgatgaatcgcctgctgacccgcccggccgtggccgagcgc
aaggacagcgatccgcgcgcgctggtgatcgcgccgacccgcgagctggccatccagatc
gaaaaggacgccaaggcgatcggtcgccacactggcctgcgcaccgcactgatttatggc
ggcgtcgattacgacaagcagcgccagcaattgaaagacggctgcgacatcatcatcgcc
acgcccggccgcctgctcgattactacaagcagcaggtcttcggcttcaacggcgtcgaa
gtgatggtgatcgacgaagccgatcgcatgttcgacctgggcttcatcaaggacgtgcgt
ttcatcttccgccgcctgccggcgcgcgaacagcgccaggtgctgctgttctcggccacg
ctcagccatcgcgtgctggagctcgcatacgagcacatgcataacgccgagaagctggcg
gtcgaaaccgaaaacgtcaccgccgatcgcgtgcgtcagcaggtgttcttcccttcgaaa
gaagaaaagatgccgttgctgctcaacctgcttgagcgcaccagcgccgagcgcagcatc
atcttcgtcaacaccaaggcggccgccgagcgcgtgaccgaccgcgtgaagcgccagggt
tatcgcgtcggtgccttgtcgggcgacgtgccgcagttgaagcgccagaagttgctgcag
cgcttccaggaaggccagctcgacatgctggtgtgcaccgatgtggccgcacgcggcctg
catatcccggcggtcagccacgtattcaattacgacctgccgcaggatgccgaggattat
gtgcatcgcatcggccgtaccgcgcgtctgggtgccgagggcgatgcgatcagcttcgcc
tgcgacctgtatgcgatgtcgctgccggatatcgaaacctatatcgggcaacgtatcccg
gtcgcggcgatcgatcccgaattgctggtgatgcccaagcccaagcagatcgacgagcag
ttcgtggcccatgccgcggccgatagcgccgagttcggcgacaaggtcattgcgcgcgag
aagaaggacagcggcggtcccggtggccgttcacgccgcgaaggcggccgcggtggcgat
tcgcgcaagccgcgcgacggcgaaaggcgcgagcgtaccgagcgcaagccggccgccgca
ccagcgacggttgcgccggtggctgcgcccgcgggcgatgccgcttccgtggcgggcgag
gcggagcgcaagcgccgtcgtcgccgtggcggtcgtggtcgtcgtcgcgagggcgatgcc
gcgcaggtgcaaaacagcaacggcagcgccgccgctgcgccgagcgagcgcaacaacgat
cgcccgcgtggcgagcgtcgtccgccgcgtaacggtggcgagcaggccggcaacggtcgt
tcgcgccaggttgttgccaccgcagcggcacacgccggcgagcacaccgcaccgaagaag
ccgggtttcttccgtcgtctgacgcggttgtttaccgggcgttga
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