Dyella sp. GSA-30: DYGSA30_07850
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Entry
DYGSA30_07850 CDS
T10269
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dyg Dyella sp. GSA-30
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyg03032
]
DYGSA30_07850 (gyrB)
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_07850 (gyrB)
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DYGSA30_07850 (gyrB)
DNA replication proteins [BR:
dyg03032
]
Prokaryotic type
DNA Topoisomerases
DYGSA30_07850 (gyrB)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DYGSA30_07850 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BDU19328
LinkDB
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Position
882653..885076
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AA seq
807 aa
AA seq
DB search
MSDNDNYDSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDH
VIVTMLDDGSVSVSDNGRGIPVDIHPEEGRSTAEVVMTVLHAGGKFDANSYKVSGGLHGV
GVSVVNALSSHLWLTIYREGQEHQQEYSLGEPLYPLKVVGASTKRGTTVRFLPSTGTFTN
TDFHYDILAKRLRELAFLNSGVTIELKDERGPEPREDVFAYEGGIRSFVQHLAQLKTALH
PNVISLSAQQDGISVELAMQWTDSYQETMFCFTNNIPQRDGGTHLTGFRAALTRSLTSYI
EKEGLAKNAKVALSGDDMREGMIAVLSVKVPDPKFSSQTKDKLVSSEVKTAVEQAVNEKL
SEFLLEHPSEARAIASKVVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL
CELFLVEGDSAGGSAKQGRNRKTQAVLPLKGKILNVEKARFDKMLSSAEVGTLITALGTG
IGKEEYNPDKLRYHRIVIMTDADVDGSHIRTLLLTFFYRQMPELIERGHVYIGLPPLYKL
KQGKQEMYLKDDAALNAYLVSNAVDNAELQVGPSAPAVTGEALEKLLRDYQLALDQVGRL
SHRFDSNLLHAMIEHTALEPAVWSDASAMQTWIDGLTKRLAASGLGKPRYRVSLRPALDE
QPAALEVVRDQHGLSHTWLLPQTFFASGEYRPILHASQDLAGLLQADAVVRRGNGSRGVL
SFAEARAWLLEEAKKGRTIQRFKGLGEMNPEQLWETTVNPETRRMLQVGVEDAFAADQMF
SMLMGEAVEPRRDFIEANALKVANLDV
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaacgacaattacgactcaagtaacatcaaggttctaaaaggtctggaagca
gtgcgcaagcgccctggcatgtacatcggtgacaccgatgacggcaccggcctgcaccac
atggtgttcgaggtcgtcgataacgcgattgacgaggctttggctggctactgcgaccat
gtcatcgtcaccatgctggacgacgggtcggtcagcgtgtcggataacggccgcggtatc
ccggtcgacattcatccggaagagggccgctcgaccgcagaagtcgtgatgaccgtgctg
cacgccggcggcaagttcgatgcgaactcctacaaggtctccggtggtctgcacggcgtg
ggcgtgtcggtggtgaacgcgctcagctcgcatctgtggctgacgatctaccgcgaaggc
caggaacaccagcaggaatactcgctgggcgagccgctttaccccctcaaggtggtggga
gcatcgaccaagcgcggtaccacggttcggttcctgcccagcaccggtaccttcaccaat
accgacttccattacgacattctggccaagcgtctgcgcgaactggccttcctcaactcc
ggtgtcaccatcgagttgaaggatgagcgtggccccgagccacgtgaggatgtgtttgcg
tacgagggcggtattcgctcctttgtgcagcatctggcccagctgaagaccgcgctgcat
ccgaacgtgatcagcctgagcgcccagcaggacgggatcagcgtggagctggcgatgcag
tggaccgactcctaccaggagacgatgttctgcttcaccaacaacatcccgcagcgcgat
ggcggcacgcatctgaccggcttccgtgcggcgctgacccgttcattgaccagctacatc
gagaaggaaggcctggccaagaacgccaaggtcgctctttccggtgacgacatgcgcgaa
ggcatgatcgcggtgctgtcggtcaaggtgcctgatcccaagttctcctcgcagaccaag
gacaagctggtttcgtccgaggtgaagaccgcggtggagcaggccgtcaacgaaaagctg
agcgaattcctgctggaacatcccagcgaggctagggccatcgcttcgaaggttgtcgat
gcggcccgcgcccgcgaagctgcccgcaaggcacgcgaaatgactcgccgcaagggtgcc
ttggacatcgccggcctgccgggcaagctggccgactgccaggaaaaggatcccgcgctt
tgcgaactcttcctggtcgagggtgactctgcaggcggttcggccaagcagggccgtaat
cgcaagacccaggccgtgctcccgttgaagggcaagatcctcaacgtggagaaagcgcga
ttcgacaagatgctgtcctcggccgaggtcggcaccctgattaccgcgctgggtactggt
atcggtaaagaggaatacaatccggacaagctgcgctatcaccgcatcgtcatcatgacc
gacgcggacgtggacggctcgcacatccgcacgctgctgctgacgtttttctaccgtcag
atgccggagctgatcgagcgcggccacgtctatatcggcctgccgccgctgtacaagctc
aagcagggcaagcaggagatgtatctcaaggacgacgcggcgctcaacgcgtacctggtt
tccaacgcggtcgacaacgccgagttgcaggtgggtccgagcgctccggccgtgaccggc
gaggcactggaaaaactgctgcgcgattatcagctggcgctcgaccaggtggggcgcctg
agccaccgcttcgacagcaatctgctccacgccatgatcgagcacaccgcgctggagccg
gcggtgtggagcgatgccagcgccatgcagacatggatcgatgggctcaccaagcgcctg
gctgctagtggcctgggtaagccacgttatcgcgtcagcctgcgtccggctctggatgag
cagccggccgcactggaagtggtgcgcgaccagcatggcctcagccatacctggctgctg
ccgcagacgttcttcgccagcggcgagtaccgcccgatcctgcatgccagccaggacctt
gccggcctgctgcaggccgatgcggtcgtgcggcgaggcaatgggtcgcgtggggtgctc
agctttgccgaagcgcgcgcctggttgctcgaggaagcgaagaagggccgtacgatccag
cgattcaagggtctgggtgaaatgaacccggagcagctgtgggagaccacggtcaacccg
gaaacccgtcgcatgctgcaggtcggtgtcgaagacgccttcgccgccgatcagatgttc
tcgatgctgatgggcgaggcggtggaaccgcgccgcgacttcatcgaagcgaacgcgctg
aaggtcgccaacctggacgtctga
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