Dyella sp. GSA-30: DYGSA30_11360
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Entry
DYGSA30_11360 CDS
T10269
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dyg Dyella sp. GSA-30
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyg03019
]
DYGSA30_11360 (hrpB)
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DYGSA30_11360 (hrpB)
Messenger RNA biogenesis [BR:
dyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DYGSA30_11360 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Secretin_N
AAA_30
AAA_19
Flavi_DEAD
OB_NTP_bind
Motif
Other DBs
NCBI-ProteinID:
BDU19679
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All DBs
Position
1296691..1299204
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AA seq
837 aa
AA seq
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MDGLPSFPIAPLLPDIVASLASKPCLVLEAPPGAGKTTQVPLALLEAAWLQGQRILMLEP
RRIAARAAAQFMASQLGEDVGQTVGYRIRFESRVSAATRIEVVTEGILTRLIQDDPELTG
IGAILFDEFHERHLAGDLGIALALDVQATLRPDLRIVVMSATLDGERIAQWLDAPRISSP
GRSFPVQVEYPPARAQETLEQHLARVSRQALVETDGDVLAFLPGRREIGRAQSILLQSLE
RDDATDVEVVQLHGELSMAEQQAALSPAEPGTRRIVLATNVAESSVTLPGIRAVVDAGQA
REPRFDPNSGFARLETVAISQASADQRAGRAGRVAPGIAYRLWPQSKRLDASRTAEIMQT
ELSGLALELAAWGSESLSWLDPPPAGALAQARALLTQLGALDAAARITSLGRRMLELGAT
PRLGAAAMRAPPELHALIADLLALMEARSPLRGEQARSDDFRARVHALHAWRDRSTAGAR
GGADSGALAAIEQSSKGWRRRLNIRTAASGVPDSHAVGDLLLHAFPDRVARRDDSNPLRY
TLANGRGARLHENTALHGEPWLVVLDIQYDARDSLIRAAAPLDPRALERDYPAQFVRERV
LRWNDERQAVEAFEEYRYAAITLERRSVPVKPEDALPALLAAIRSRGIGVLPWSENALRL
RARMQSLRGWMPELGLPDVSDGALLASLEDWLSPYLNGKRRLDALSAEELSQALASLFDY
EQRRQLDSHAPDSLTVPSGITHRLEYTPDEPPVLAVKLQELFGLADTPRIAGGRIPVTLH
LLSPARRPIQVTQDLKGFWERTYPEVKKELKGRYPRHPWPDDPWTAAPTHRAKPRGT
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggacggacttcctagtttccctatcgctccgttacttccggatatcgtcgcttcatta
gcgtcgaagccttgtcttgtcctggaagcgcccccgggcgcaggcaaaacaacacaggtt
ccgctggctctgctggaggccgcatggcttcagggccagcgcatcctgatgctcgaaccc
cgtcgcatcgccgccagagccgctgctcaattcatggcgagccagctaggcgaagatgtc
ggacagacggtgggttaccgaatccgcttcgaatcccgcgtcagcgctgcaacgcggatc
gaagtggtgactgagggcattcttacgcgcctaatccaggacgaccccgaattgaccggg
atcggcgcgatcctgttcgacgaattccatgagcggcatctagcaggcgatctcggcatt
gccctggcgctggatgtacaggccacgttacggccggatctgcgaatcgtggtgatgtcc
gcgaccctcgacggcgagcgtatcgcgcagtggttggatgcgccgcgcatcagtagtccg
gggcgtagttttcccgtgcaggtcgagtatcccccagcgcgcgcgcaggaaacgcttgag
cagcatctcgcacgggtctcgcgccaagccttggttgaaaccgatggcgatgtgctcgcg
tttcttccggggcgtcgagagattggacgagcgcaatccatcttgctgcagagtctggaa
cgcgatgatgcgacagacgtcgaagtcgtgcagctgcacggcgaactgtcaatggccgag
cagcaggctgcgctttcccctgcggagccaggaacacggcgcattgtgctggcaacgaac
gtcgccgaatcgagcgtgaccttgcccggcattcgtgcggtcgtcgatgcaggacaggcg
cgtgagccacgcttcgatccgaactccggttttgcgcggttggagacggtggcgatttcg
caggcctccgccgatcagcgcgctggccgtgccggtcgtgttgcgccgggtatcgcttat
cgactatggccgcagagcaagcgcctcgatgcttcgcgcacggccgaaatcatgcagacg
gagttgtccgggcttgcgctggaattggctgcatggggtagcgagagcctgtcgtggctc
gatccgccgccggcaggcgctctggcgcaggcgcgtgccttgctgactcaattaggcgca
ctggatgccgctgcacgcatcacatcgttgggtcgacgcatgctcgaactcggtgccacg
ccgcgcctcggcgcggccgccatgcgtgccccgcccgagctacatgccttgattgcggac
ctgcttgcgctgatggaagcgcgctcaccgctacgaggcgaacaggcgcgcagcgacgac
ttccgcgcgcgtgtgcatgccttgcacgcgtggcgcgatcgcagcacggccggcgcgcgt
ggcggtgccgatagcggcgcgttggccgcgatcgagcaatcgtccaagggatggcgtcgt
cgcctgaatatccgtaccgcagccagcggcgtgccggacagtcatgcggttggcgatctg
ttgctgcacgcgtttcccgatcgcgtcgcgcgccgcgacgacagcaatccgctgcgctat
accctggccaatggccgtggtgcgcggctgcacgaaaacaccgcgctgcatggcgaaccc
tggctggtggtgctggatattcaatacgacgcgcgcgatagcctgattcgtgccgccgcg
ccgctcgatccgcgggcgctggagcgcgactaccccgcgcagttcgtgcgcgaacgcgtg
ctgcgctggaacgatgagcggcaggcggtcgaggcgttcgaggaatatcgctatgccgcg
attacgctggagcgccgcagtgtgccggtcaagccggaagacgcactgcctgcgttgctg
gctgcgatacgcagccggggtatcggcgtattgccgtggagcgagaacgcgcttcgttta
cgcgcacgcatgcaatcgctacgcggctggatgcccgagctggggttgccggatgtgtcc
gacggagccttgcttgcatcgctggaggattggctctcgccctatctcaatggcaagcgc
cgtctcgatgccttgagcgcggaagaactctcacaggcgctggcttcgctatttgactac
gaacagcgtcgacagcttgatagccacgcgcccgatagcctcactgtgcccagtggcatc
acgcatcgtctcgagtacacgccggacgagccacccgtgctggcggtcaagctgcaggag
ctgtttgggctggccgatacgccgcgtatcgccggtggccggattccggtcacgctgcac
ctgctctcgccggcgcggcgccctattcaagtgacgcaagatttgaagggtttctgggaa
cgcacctacccggaagtcaaaaaagaactcaaaggtcgctatcctcgccacccttggccg
gacgatccgtggaccgccgcgccgacccatcgtgccaagccgcgcgggacctga
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