Dyella sp. GSA-30: DYGSA30_13080
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Entry
DYGSA30_13080 CDS
T10269
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03420
Nucleotide excision repair
dyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DYGSA30_13080 (uvrD)
03430 Mismatch repair
DYGSA30_13080 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_13080 (uvrD)
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYGSA30_13080 (uvrD)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DYGSA30_13080 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
DYGSA30_13080 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
BDU19851
LinkDB
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Position
complement(1494715..1496922)
Genome browser
AA seq
735 aa
AA seq
DB search
MDVSYLIDKLNDAQREAVCAPPGHYLVLAGAGSGKTRVLTHRIGWLTQVDGVPPWAVLAV
TFTNKAAGEMRARLEQLIPGGTQGLTVGTFHGIAHRLLRRHWREAGLPEGFQILDSDDQQ
RIVKRVVAGLGLDEARFPPRQATWQINNWKDEGKRPENIEHRDHPVTRTSVQIYQAYEDA
CRRAGLVDFAELLLRAHELWLKNPAVLEHYQQRWRHLLIDEFQDTNTLQYAWIRVLAGDT
GKVFVVGDDDQAIYGWRGAKVENVQQFLRDFPGARTIRLEQNYRSTATILKAANSVIARN
GGRLGKQLWTDGGDGERIAVYAAYNEQDEARFVIERIREYVAEHGNARDCAILYRSNAQS
RNFEEQLTQRSIPYRVYGGLRFFERAEIKDALAYLRLSANRHDDAAFERAVNTPPRGIGD
RTLDVLRRRARGENTSLWEALLGELASGSELAGRAKNAIKAFVNLINDMAHTFVPPVAEG
EESQALNLAEQIEHAINHTGLRDFYEKDSRGSAESRVENLDELVNVASRFELTQDDIDAG
LSELAAFLSHAALEAGEGQGESWDDCVQLMTLHSAKGLEFPVVFLVGMEEGLFPSQRSVE
DEGRLEEERRLAYVGITRARERLFITHAESRRMHGVEMLARPSRFLGEIPAELLDEVRPR
VQVSRPMYAGRFAEPSGSLQEDLPVKLGQRVSHPSFGEGVVVSAEGSGAHTRLQVNFEDA
GSKWLVAAYANLTPL
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcgtatctgatcgacaagctcaacgacgcacaacgcgaggccgtctgcgcc
ccgcccggccactacctggtgctggccggtgccggctccggcaagacgcgcgtgctcacc
caccgcatcggctggctgacccaggtcgacggcgtgccgccatgggctgtgctggcggtg
accttcaccaacaaggcggctggcgagatgcgcgctcgcctcgagcagctgattccgggt
ggcacgcaaggccttaccgtcggcaccttccacggcatcgcccaccgtctgctgcgccgc
cattggcgcgaggccggcttgcccgaaggcttccagatcctcgattccgacgaccagcaa
cgcatcgtcaaacgtgtcgtggcagggctgggcctggacgaagcacgctttccgccgcgc
caggcaacctggcagatcaacaactggaaagacgaaggcaagcgcccggaaaatatcgaa
catcgcgaccatccggtcacgcgtacctccgtgcagatctaccaggcctacgaagatgcc
tgccgacgcgccggcctggtcgacttcgccgaactgctgctgcgcgcgcacgagctctgg
ctgaagaacccggccgtgctggagcactaccagcagcgctggcgccatctgttgatcgac
gaattccaggacaccaacacgctgcaatatgcgtggattcgcgtgctggccggcgatacc
ggcaaggtcttcgtggtcggcgatgacgaccaggcgatctatggctggcgcggcgccaag
gtcgagaacgtacagcagttcctgcgcgatttccccggcgcgcgcacgatccgcctggag
cagaactaccgctccaccgcgaccattctcaaagccgccaacagtgtgatcgcgcgtaat
ggcggccgcctgggcaagcagctgtggacggatggcggcgacggcgagcgcatcgccgtc
tacgccgcttataacgaacaggacgaagcgcgcttcgtgatcgagcgcatccgcgaatac
gtcgccgaacacggcaatgcccgcgactgcgccatcctctatcgctcgaacgcgcaatcg
cgcaacttcgaagagcagctgacccagcgcagcatcccctatcgcgtatacggcggtctg
cgcttcttcgagcgcgcggaaatcaaggacgcactcgcctatcttcgcctgtccgccaac
cgtcatgacgacgcggccttcgaacgcgccgtcaacacgccgccgcgcggcatcggcgac
cgcacgctcgacgtgctgcgccgtcgggcacgaggtgaaaacacctcgctgtgggaagcc
ctgctcggcgaactggccagcggcagcgaactggccggccgcgcgaagaatgcgatcaag
gcgttcgtgaacttgatcaacgacatggcccacaccttcgtgccgccggtcgccgaaggc
gaggaaagccaggccctgaaccttgccgaacagatcgagcacgcgatcaaccacaccggg
ctgcgcgacttctacgaaaaggattcacgcggcagcgccgagtcgcgcgtggagaacctg
gacgaactggtcaacgtcgccagtcgtttcgaactgacccaggacgatatcgatgccggc
ttgagcgagcttgccgcgttcctgtcgcacgctgcgcttgaagcaggcgaaggccagggc
gaatcctgggacgactgcgtgcagctgatgacgctgcattcggccaagggcctggagttc
ccggtagtgttcctggtcggcatggaagaaggcctgttccccagccagcgctcggtcgaa
gacgaaggccgcctggaagaagagcgtcgccttgcctacgtcggcatcacccgcgcgcgc
gaacgcctgttcatcacgcacgccgaatcacggcgcatgcacggcgtggaaatgctcgca
cgcccgtcgcgcttcctcggcgaaataccggcggagctgctggacgaagtacgtccgcgt
gtacaggtcagccggccgatgtacgccgggcgttttgccgagcccagcggcagcctgcag
gaagacttgccggtcaagctcggccagcgcgtcagccatccgagctttggcgaaggcgtg
gtggtgagtgcggaagggagcggtgcacatacgcgtctgcaggtgaatttcgaagacgct
ggcagcaaatggctggtggcggcatatgcgaatctgacgccgctttag
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