Dyella sp. GSA-30: DYGSA30_20740
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Entry
DYGSA30_20740 CDS
T10269
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DYGSA30_20740 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyg03019
]
DYGSA30_20740 (deaD)
03009 Ribosome biogenesis [BR:
dyg03009
]
DYGSA30_20740 (deaD)
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DYGSA30_20740 (deaD)
Messenger RNA biogenesis [BR:
dyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DYGSA30_20740 (deaD)
Ribosome biogenesis [BR:
dyg03009
]
Prokaryotic type
rRNA helicases
DYGSA30_20740 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDU20617
LinkDB
All DBs
Position
complement(2368003..2369907)
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AA seq
634 aa
AA seq
DB search
MSSPSSDSTPAPAGFAALGLHPELLRALADVGYESPSPIQAATIPPLLEGRDVLGTAQTG
TGKTAAFALPILSRIDMKPGKPQSLVLAPTRELAIQVAEAFQRYAAHFPGFQVLPIYGGQ
GYGPQLHALKRGVNIVVGTPGRVIDHLERGTLDLSELRYLVLDEADEMLRMGFIDDVEKV
LQATPPERQVALFSATMPAPIRKIAQHHLKNPVEVNIKSSTTTAANIRQRYWFVSGMHKL
DAMTRILEAEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQPQRERVIQQLKD
GKLDILVATDVAARGLDVERISHVMNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRE
KGMLRSIERATRQPIEEMKLPTVEAVNDQRISRFKQRITDTLAIGELGLFQQLIEQYEQE
HNIPAVEIAAALARIAQGDQPLLLTPPPKREAPAREFAPRERNDRNDRGDRNDRGDRRPR
PEGEERPRREREAPREFGTRPLRAHVTEQGMKTYRVEVGHEHGVKPGNIIGAIANEAGLE
SQFIGRLSIRSEFSLIDLPDGMPPEVFQHLQKVWVSQQQLRIHEWDGQDASGGDAPAPRK
GGFRPGGGGGGGFKGKPRPPGGKPSGNKPPRKFK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccccgtcttccgattccactccggcccccgccggatttgctgcgcttgggctg
caccctgagcttttgcgggccttagccgatgtcggctatgaatcgccctcgccgattcag
gctgccaccattccgcccttgctcgagggccgcgacgtgctcggcaccgctcagaccggt
accggcaagacggccgctttcgcactgccgatcctttcccgcatcgacatgaagccgggc
aaaccgcagtcgctggtgctggcgccgacccgcgaattggccatccaggtggctgaagcg
tttcagcgctacgccgcccacttccccggtttccaggtgctgccgatctacggtggccag
ggttacggcccgcagctgcatgcgctcaagcgcggcgtgaacatcgtggtcggcaccccc
ggccgcgtgatcgaccaccttgaacgcggcacgctggatctgtccgaactgcgctatctg
gtgctcgacgaagccgacgaaatgctgcgcatgggctttatcgacgacgtcgagaaagtg
ctgcaggccacgccgcccgagcgccaggtcgcgctgttctcggccaccatgccggcaccg
atccgcaagattgcccagcatcacctgaagaacccggtcgaagtgaacatcaagtcgtcg
accacgaccgcggccaatattcgccagcgttattggtttgtcagcggcatgcacaagctc
gacgcgatgacgcgcatcctcgaggccgagccgttcgacgcgatgatcatcttcgcgcgc
accaagcaggccaccgaagagctcgccgaaaagctgcaggcacgcggtctcgccgccgcg
gcgatcaatggcgacatcgcacagccgcagcgcgaacgcgtgatccagcagctcaaggac
ggcaagctcgatatcctcgtcgcgaccgacgtggccgcacgcggcctggacgtcgagcgc
atcagccatgtgatgaactacgacattccgtacgacacggaaagctatgtgcatcgcatc
ggccgtaccggccgcgccggccgcagcggcgaagcgatcctgttcgtgacgccgcgcgag
aaaggcatgctccgctcgatcgagcgcgccacccgccagccgatcgaagaaatgaagctg
ccgacggtcgaagcagtcaacgaccagcgcatcagccgcttcaagcagcgtattaccgac
acgctggcgatcggcgagctgggcctgtttcagcagctgatcgagcagtacgagcaggaa
cacaacatcccggcggtcgagatcgccgccgcacttgcacgcattgcccagggcgaccag
ccgctgttgcttacgccgccgccgaagcgcgaagcaccggcacgtgagttcgcgccgcgc
gagcgcaacgatcgtaacgatcgcggtgaccgtaacgatcgtggcgatcgtcgtccccgt
cccgaaggcgaggaacgtccgcggcgcgagcgcgaggcaccgcgcgaattcggcacccgt
ccgctgcgcgcgcacgtcaccgagcagggcatgaagacctaccgcgtcgaagtgggccac
gagcacggcgtcaaaccgggcaatatcatcggcgccatcgccaatgaggccggcctggaa
agccagttcatcggccgcctgagcatccgcagcgagttcagcctgatcgacctgccagat
ggcatgccgccggaggtcttccagcacctgcaaaaagtctgggtgagccagcagcagctg
cgtatccatgagtgggacggccaggacgccagtggcggcgacgcaccggcaccacgcaag
ggcggtttccgtccgggcggcggtggcggcggtggcttcaagggcaagccccgtccgcca
ggcggcaagccttcgggcaacaagcctccgcgcaagttcaagtaa
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