Dyella sp. GSA-30: DYGSA30_27350
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Entry
DYGSA30_27350 CDS
T10269
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DYGSA30_27350 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyg03019
]
DYGSA30_27350 (pnp)
03016 Transfer RNA biogenesis [BR:
dyg03016
]
DYGSA30_27350 (pnp)
Enzymes [BR:
dyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DYGSA30_27350 (pnp)
Messenger RNA biogenesis [BR:
dyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DYGSA30_27350 (pnp)
Transfer RNA biogenesis [BR:
dyg03016
]
Prokaryotic type
tRNA degradation factors
DYGSA30_27350 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
BDU21278
LinkDB
All DBs
Position
3137320..3139425
Genome browser
AA seq
701 aa
AA seq
DB search
MAKVTKSFQYGNHEVTLETGEIARQASGAVMVSMGGTVVLVTAVAASKARDGQDFFPLTV
DYVEKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEDFKNEVQVIAQVISLN
PEIDGDIPAILGASAALTLAGIPFKGPIGAARVGYADGKYLLNPTATELKTSDLDLVVAG
THNAVLMVESEAKLLTEEVMLGAVVFGHQQMQVAIEAINAFVAEAGRKTFHWEAPARNDA
LFDSINSILGDRLEKAFAIRDKLERRDAISALKGDIKTGIAQTAANHGWSDADIGNAFAE
IEYTTMRSGVLKTKVRIDGRQLDDVRQITARVDVLPRTHGSALFTRGETQALVVVTMGTT
RDAQIIDAPEGESKDPFLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPTME
QYPYVLRVVSEITESNGSSSMASVCGSSMAMMAAGVPLKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTADGVSALQMDIKIDGITEEIMKVALEQAKRGRLHILGEMAK
VISEPRSEMSEYAPRLLTIKIHPDKIREVIGKGGATIRSITEETGTTIDITDDGTVVIAS
VNREAANAAKARIEQIVSDVEPGRIYEGKVAKLMDFGAFVTILPGKDGLVHVSQISNERV
EKVSDKLKEGDIVKVKVLEVDKQGRIRLSMKAVTEDENANA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaagtaaccaagtcattccagtacggtaatcacgaagtcacactggagacgggc
gaaatcgcccgccaggcgtccggcgcagtcatggtcagcatgggcgggaccgttgtcctg
gtcacggccgtagctgcttccaaggcgcgcgatgggcaggatttcttccctctcactgtc
gactacgtcgagaagttctactcggccggccgtatccccggtggcttcttcaagcgcgaa
ggccgcccgaccgaaaaggagacgctgacctcgcgtctgatcgatcgcccggtgcgtccg
ctgttcccggaagatttcaagaacgaagtccaggtcatcgcccaggtcatctcgctcaat
cctgagatcgacggcgatatcccggccatcctgggcgcgtccgctgcgctcaccctggcc
ggtatcccgttcaagggtccgatcggcgctgctcgtgtcggttacgccgatggcaagtac
ctgctgaatccgaccgctaccgagctgaagacctccgacctcgacctggtcgtcgccggt
acgcacaacgccgtgctgatggtcgaatccgaagccaagctgctcaccgaagaagtgatg
ctcggcgccgtggtgttcggtcaccagcagatgcaggtggcaatcgaagccatcaatgcg
tttgtggccgaagccggccgcaagacgttccattgggaagccccggcgcgcaacgacgcg
ctgttcgattcgatcaattcgattcttggcgaccgtctcgaaaaggctttcgcgatccgc
gacaagctggagcgtcgcgacgccatcagcgcgctcaagggcgacatcaagaccggcatc
gcgcagaccgcggcgaatcacggctggtccgatgcggatatcggcaatgcctttgccgaa
atcgaatacaccacgatgcgcagcggcgtgctcaagaccaaggtgcgtatcgacggtcgc
cagctcgatgacgtgcgtcagatcaccgcgcgtgtcgacgtgttgccgcgcacccacggc
tcggcgctgttcacccgtggcgagacgcaggcgctggtcgtcgtcacgatgggcaccacg
cgtgacgcccagatcatcgatgcgccggaaggcgagtcgaaggatcccttcctgttccat
tacaacttcccccccttctcggtgggcgaagcgggccgcttcggcgccccgaagcgtcgt
gaaatcggtcatggccgtctcgccaagcgcggcgtccaggcggtcaagccgacgatggag
cagtacccgtatgtgctgcgcgtcgtctcggaaattaccgagtcgaacggctcctcgtcg
atggcctcggtttgcggttcctcgatggccatgatggcagccggcgtgccgctgaaggct
ccggtggcgggtatcgccatgggcctggtcaaggaaggcaacgattttgtcgttctgtcg
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtaccgcc
gatggcgtgtccgcgctgcagatggacatcaagatcgacggcatcaccgaagagatcatg
aaggtggcgctggagcaggccaagcgtggtcgtctgcacatcctgggcgaaatggccaag
gtgatcagcgagccgcgttcggaaatgagcgaatacgccccgcgtctgctcaccatcaag
atccatccggacaagatccgcgaagtcatcggcaagggcggcgccaccatccgctcaatc
accgaagagaccggcaccaccatcgacatcaccgacgacggcacggtcgtgatcgcttcg
gtcaaccgcgaggcagccaacgccgccaaggcgcgtatcgagcagatcgtctccgacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagctgatggacttcggcgcattcgtc
acgatcctgccgggcaaggacggtctcgtccacgtctcgcagatctccaacgagcgcgtc
gagaaggtctccgacaagctgaaggaaggcgatatcgtcaaggtcaaggtgctcgaagtg
gacaagcagggccgtatccgcctgtccatgaaggccgtcaccgaagacgagaacgccaac
gcttaa
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