Dyella sp. GSA-30: DYGSA30_27770
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Entry
DYGSA30_27770 CDS
T10269
Symbol
rpfB
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg00061
Fatty acid biosynthesis
dyg00071
Fatty acid degradation
dyg01100
Metabolic pathways
dyg01212
Fatty acid metabolism
dyg02024
Quorum sensing
dyg04146
Peroxisome
Module
dyg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
DYGSA30_27770 (rpfB)
00071 Fatty acid degradation
DYGSA30_27770 (rpfB)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
DYGSA30_27770 (rpfB)
09145 Cellular community - prokaryotes
02024 Quorum sensing
DYGSA30_27770 (rpfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
dyg01004
]
DYGSA30_27770 (rpfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dyg04147
]
DYGSA30_27770 (rpfB)
Enzymes [BR:
dyg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
DYGSA30_27770 (rpfB)
Lipid biosynthesis proteins [BR:
dyg01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
DYGSA30_27770 (rpfB)
Exosome [BR:
dyg04147
]
Exosomal proteins
Exosomal proteins of breast milk
DYGSA30_27770 (rpfB)
Exosomal proteins of breast cancer cells
DYGSA30_27770 (rpfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
DUF4235
Motif
Other DBs
NCBI-ProteinID:
BDU21320
LinkDB
All DBs
Position
complement(3182057..3183739)
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AA seq
560 aa
AA seq
DB search
MSNERPWLKHYPDGVPAEIDINQYPSVVAVLEEAFERFRERPAFASFGKKLSYGQIDAMS
KQFAGYLTGELKLVKGDRIAIMMPNVLQYPIALFGALRAGLIVVNTNPMYTARELKHQLE
DSGAKAIVVLDNFAATLQQVVAETGVKHIVTTGIGDLLGLKGVLVNFVVKNVKKLVPAFS
LPQAVRFKDALSRGAAHTVKTPDIGHDDIAFLQYTGGTTGVAKGAMLTHGNMVANMLQAG
SWIGTNLRPGQEVVITALPLYHIFSLTANGLVFMRLGGLSWLITNPRDMPAFVKELKASG
FTALTGVNTLFNGLLNTAGFAELDFSRLHLSLGGGMAVQRAVAERWKKVTGCTLVEAYGL
TETSPAACINPLDLKEYNGSIGLPVSSTDAAIWSEDNQPLGVGEVGELMIHGPQVMKGYW
QRPDETIKVLGSDGWLHTGDIAKMDENGYFYIVDRKKDMILVSGFNVYPNEVEDAVMQHP
GVAEVAAIGMPDEHSGEVVKIFVVRKDPNLTVEELKQFCKENLTGYKRPKVIEFRDALPK
SNVGKILRRELRDEKKPAAA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgagcgtccgtggctgaagcattatccggatggtgtacccgcagaaatcgac
atcaaccagtacccatcggttgtcgcggtgctggaagaagccttcgaacgttttcgtgag
cgcccggccttcgccagttttggcaagaagctcagctacggccagatcgatgcgatgagc
aagcagttcgccggttatctcaccggtgagctcaagctggtcaagggcgatcgcatcgcg
atcatgatgcccaacgtgctgcaatatccgatcgccctgttcggcgcgttgcgcgccggg
ctgatcgtggtcaataccaacccgatgtacaccgcgcgcgagctgaagcatcagctggaa
gattccggcgcgaaagccatcgtggtgttggacaatttcgccgcaaccttgcagcaggtc
gtggcagagaccggggtcaagcacatcgttaccaccggcatcggcgatctgctcggcctc
aagggcgtgctggtcaactttgtcgtcaagaacgtcaagaagctggtaccggccttcagc
ctgccgcaggcggtgcgcttcaaggacgccttgtcgcgtggcgcggcccacacggtgaag
acgcccgatatcggtcacgacgacatcgccttcctgcagtacaccggcggcaccaccggt
gtggccaagggtgcgatgctcacgcacggcaatatggtcgccaacatgctgcaggccggt
tcgtggatcggcaccaatctgcgaccgggccaggaagtggtgattacggcgttgccgctg
tatcacatcttttcgctgaccgcgaacggcctggtgttcatgcgccttggtggcctgagc
tggctgattaccaatccgcgcgacatgcctgccttcgtcaaggagctcaaggcatcgggt
tttaccgcattgaccggcgtcaatacgctgttcaatggcctgctcaatacggcgggcttt
gccgagctcgatttctcgcgcctgcacctgagcctgggtggcggcatggccgtgcagcgc
gcggtggccgaacgctggaaaaaggtgaccggctgcaccctggtcgaggcctacggcctg
accgaaacctcgccggcggcatgtatcaacccgctcgacctgaaggagtacaacggctcc
atcggcctgccggtgtcctccaccgatgcggcaatctggtccgaagacaaccagccgctt
ggcgtgggcgaagtgggtgagctgatgatccacggcccgcaggtgatgaagggttactgg
cagcgtccggacgaaaccatcaaggtgctcggcagcgacggttggctgcacactggcgac
atcgccaagatggacgagaacggctacttctatatcgtcgatcgcaagaaggacatgatc
ctggtgtccggcttcaacgtgtacccgaacgaagtcgaagacgccgtcatgcagcaccct
ggcgtggccgaagtggccgccatcggcatgcccgacgagcattccggcgaagtggtgaag
attttcgtggtgcgcaaggacccgaaccttaccgtcgaggagctcaagcagttctgcaag
gagaacctcaccggttataagcgccccaaggtgatcgagttccgcgacgcgctgcccaag
agcaatgtaggcaagattctgcggcgtgaactacgcgatgagaagaagccggctgcggcc
tga
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