Dyella sp. GSA-30: DYGSA30_28160
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Entry
DYGSA30_28160 CDS
T10269
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03410
Base excision repair
dyg03430
Mismatch repair
dyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DYGSA30_28160 (recJ)
03430 Mismatch repair
DYGSA30_28160 (recJ)
03440 Homologous recombination
DYGSA30_28160 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_28160 (recJ)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DYGSA30_28160 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DYGSA30_28160 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DYGSA30_28160 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BDU21359
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Position
3226748..3228460
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AA seq
570 aa
AA seq
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MRLQLHRRSLQGEPRGWGDGVHPVLQRIFAARGVFEPMQAEHRLSRMLSPQQLGGMDEAV
ALLVEAIAHDWSILIAGDYDCDGATGTVVAMRGLRMLGARHVNYAIPNRFVHGYGLSPAL
VESLQPRPQLIVTVDNGVASIAGVEVAKALGIRVIVTDHHLPGEQLPAADAMVNPNLSGD
GFPSKALAGVGVMFYLLLALRARMRELGNFGESAGPDLSVLLDLVALGTVADLVPLDYNN
RVLVEAGLKRLRSGRGCAGITALIEASQRSVATLCPSDLGYAVGPRLNAAGRLEDMRIGV
ECLLTDDAPLARRYAQQLSAINQERRDLQAAMVAEAEIMVGQAAQTDAVGVALYEPSWHA
GVVGLVASKLKERLHRPVIAFAPAGEDNPHDLRGSARSIGGFHIRDALAMIDARHPGLIE
RFGGHAMAAGLSLKTEDYPRFAEAFDAIAREWLSEEALQAMLYTDGELPPGAFTLDLARQ
LRYAAPWGQAFPEPLFDNVFECAQWKPMGEKHLRLSLRDPRDGAVHDAVMFNAYDGTPPP
RAMRAAYELVINDWQGRESVRLLLRHIEPV
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgcagttgcaccggcgcagcctgcagggcgagcccagaggctggggcgatggc
gtgcacccggtgctgcagcggatttttgccgcgcgcggcgtgttcgaacccatgcaggcc
gaacatcgcctgagccgcatgctgtcgccgcagcaattgggcggcatggacgaggccgtc
gcgttgctggtcgaagcgattgcccatgactggtcgatcctgatcgccggtgactacgac
tgcgacggcgcgaccggtacggtcgtcgccatgcgcggcttgcgcatgcttggcgcgcgc
cacgtgaactacgccatacccaatcgcttcgtgcatggctacggcttgagtccggcgctg
gtggaatccttgcaacccaggccgcagctgatcgtcactgtcgacaatggcgtggcgagc
atcgccggcgtcgaagtcgccaaggcgctgggcatccgcgtcatcgtgactgatcaccat
ttgccgggcgagcagttgccggccgccgatgcgatggtcaatcccaatctttccggcgat
ggctttcccagcaaggcattggccggtgtcggcgtgatgttctatttgttgctggcgctg
cgtgcacgcatgcgcgagctgggtaacttcggcgaaagtgccggcccggatctgtcggta
ctgctcgatctggtcgcgttagggacggttgccgacctggtgccgctcgactacaacaat
cgcgtgctggtcgaggccggcttgaagcgcctgcgcagcggtcgcggttgcgcaggcatc
acggccttgatcgaagcaagtcagcgcagcgtcgccacactttgtccgagcgatctgggt
tatgccgtagggccgcgcctgaatgcggccggtcgtctcgaagacatgcgtatcggcgtg
gaatgcctgcttaccgacgatgcgccactggcacggcgctatgcgcagcaattgagcgcg
atcaaccaggagcgccgcgacctgcaggcggcgatggtcgccgaagccgaaatcatggtg
gggcaggcggcgcagaccgatgcggtgggcgtggccttgtatgagccgagctggcacgcc
ggcgtagtcggcctggtcgcatccaagctgaaggagcgtctgcatcgcccggtgatcgcc
tttgcgccggccggcgaagacaacccgcacgatttgcgtggatcggcgcgttccattggc
ggctttcatattcgcgacgcgctggccatgatcgatgcccgccacccggggctgatcgaa
cgcttcggcggtcatgccatggccgccggtctgagtctgaaaaccgaggactacccgcgc
tttgccgaagccttcgatgcgatcgcgcgcgaatggctgagcgaggaagccttgcaggcg
atgctttatacggacggtgagttgccgcccggcgcatttaccctcgatctcgcgcgtcag
ctccgttacgcggcaccgtggggccaggcgtttccagagcccttgttcgacaacgtgttc
gaatgcgcgcaatggaaacccatgggcgaaaaacacctgcgcctgagtctgcgcgatccc
cgggacggcgccgtgcacgatgcggtgatgttcaatgcctacgacggtacgcctccgccg
cgagcgatgcgtgcagcctacgagctggtgatcaacgactggcaaggacgcgaaagcgta
cgtttgctgttgcggcatatcgagccggtctga
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