Dyella sp. GSA-30: DYGSA30_35130
Help
Entry
DYGSA30_35130 CDS
T10269
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DYGSA30_35130 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_35130 (sbcB)
Enzymes [BR:
dyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
DYGSA30_35130 (sbcB)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
DYGSA30_35130 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DYGSA30_35130 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DYGSA30_35130 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
SSURE
Motif
Other DBs
NCBI-ProteinID:
BDU22056
LinkDB
All DBs
Position
4190830..4192281
Genome browser
AA seq
483 aa
AA seq
DB search
MGMQTFLWHDYETFGADPWRDRPVQFAGIRTTMELEIVGEPVMFFAKPPREMPPNPEACL
ITGITPQQAERDGVIEAEFASRVQEQLAQPGTCGVGYNSLRFDDEVTRQMLYRNFYEPYG
REWENGNSRWDLIDLVRMCQALRPEGIVWPTREDGTPSFKLEHLAQANHLQQERAHDALS
DVYALIDLARLIRVRQPRLWDWYYGLRRKQKVFELLDTVHMTPLVHVSSRYPASRHCLSV
IVPLTPHPTRPGEIIIYDLSTDPEELLALDADDIADRVFVARADLPEGVERIPLRTVRAN
RAPALAPISVLNGVDHERLQLNLELCLAHREKLVAASGLNEKLREVFRRSTDLPPAADPE
LGLYGAFLPDADKRLLADVRATPPDQMGGRTFPFRDARYPELLFRYRARNWPETLDAEER
LRWDQFCRDRLTRPGPLTGLTLDDYFAQIETLRTDPSRHDKLALLDQLQAWGDELASGIA
NLA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
gtgggcatgcagacgtttttatggcacgactacgaaacctttggcgccgatccctggcgc
gaccgaccggtccaattcgcgggtatccgcaccaccatggagctggagatcgtcggcgag
ccggtgatgtttttcgccaagccgccgcgcgaaatgccgccgaaccccgaggcctgcctg
atcaccggcatcacgccccagcaggccgagcgcgacggtgtgatcgaggcggagttcgcc
tcgcgagtccaagagcaactggcccagcccggcacctgcggtgtcggctacaactcgctg
cgcttcgacgacgaagtcacccggcagatgctgtaccggaatttctacgagccgtatggg
cgcgagtgggagaacggcaactcgcgctgggacctgatcgacctggtgcgcatgtgccag
gcgctgcggcccgagggtatcgtgtggcccacgcgcgaggacggcacgcccagcttcaag
ctggaacatctggcgcaggccaaccacttgcagcaggaacgcgctcacgatgcgctgtcg
gacgtgtacgcgttgatcgatctggcacgcctgatacgcgtgcgtcagccgcgcctgtgg
gactggtattacgggctgcgccgcaagcagaaagtgttcgagctgctcgacacggtgcat
atgacgccgctggtgcacgtatcgtcgcgataccccgccagccgccattgcctgagcgtc
atcgtgccgttgacgccgcatccgacgcggcccggcgagatcatcatctacgacttgtcg
accgatcccgaagagctgctggcgctcgatgcggacgatatcgctgaccgcgtcttcgtg
gcacgggcggacctgcctgagggtgtcgaacgcattccgctacgtaccgtgcgcgccaac
cgtgcgccggcgctggcgccgatctcggtactgaacggcgtcgatcacgaacggcttcag
ctcaatctggagctctgcctggcacatcgtgaaaagctggtcgcggcgtcgggcttgaac
gaaaaactgcgcgaagtgtttcgccgcagtaccgacctgccgcctgccgccgatcccgaa
ttggggctttatggcgcctttctacccgatgccgacaagcgcctgctggccgatgtccgc
gccacgccgcccgatcagatgggcgggcgtaccttcccctttcgcgatgcgcgctatccg
gaactgctgttccgttaccgcgcacgcaactggcccgagacgctggatgccgaagaacgt
ctgcgctgggaccagttttgccgcgaccgcctgacccggccaggccccttgaccgggctg
acgctggacgactacttcgcgcagatcgagaccttgcgcaccgatccgagccggcacgat
aagcttgcgctgcttgaccaactccaggcctggggcgacgaactcgcctcgggaattgcc
aacctcgcctga
DBGET
integrated database retrieval system
