Dyella sp. GSA-30: DYGSA30_40730
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Entry
DYGSA30_40730 CDS
T10269
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DYGSA30_40730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_40730 (mfd)
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYGSA30_40730 (mfd)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DYGSA30_40730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AroM
ERCC3_RAD25_C
AAA_30
AAA_22
Glyco_tran_WecG
RecG_dom3_C
Lipase_chap
Motif
Other DBs
NCBI-ProteinID:
BDU22616
LinkDB
All DBs
Position
4771937..4775395
Genome browser
AA seq
1152 aa
AA seq
DB search
MPSILSHPPLPTTPKQRRYWTPPHGSARALLVAEAARSHGGLLVAVTRDTQRAHALEDEL
RIFAGGLPVLHFPDWETLPYDVFSPHPEIVSQRIATLYQLPSVERGVLVVPMATLMQRIA
PRSHITGSGLMLKKGQKFDLSAEQRRLEAAGYRNVPQVAEPGDFAIRGALIDIFPMGTAE
PYRVELFDDEVESIRSFDPESQRSHQQVERVELLPAREFPLTDTAAKDFRGKLRERFPID
VRRCPLYQDMKEGVTPGGIEYYLPLFFEQTATLFDYLSETAVFLLAEGALDAAQQFWQQT
GERYDQRAHDIERPVLPPAELYLSPEQLREQLNKRLRVEVVPSGHEHAVDTGTQPAPELP
INRKGEEPGTSLRHFMASYPGRLLIAADSAGRREALIETLAAAGMKPDSVENWHSFAPAT
GAAPKFAITTAALEQGFAITRPALTVLTERELYGERVRTERKRRRGAERDPESIIRDLTE
LTIGAPIVHVDHGVGRYQGLISMDVGGMAGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTA
PELAPLHSLGGDAWERARKKAAEKVRDVAAELLAIYAQREARGGQSLSIDRQLIEEFGAS
FPFEETPDQEHAIGAVLSDLVAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAVLV
PTTLLAQQHYRNFADRFADWPVRVDVLSRFKSTKEVNEALKRLAEGQIDVIIGTHKLLQP
DIKFKDLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLI
ATPPAHRMAVRTFISAWEPALIREAFQRELQRGGQVYFLHNEVNTIERTAREIEELIPEA
RIGIAHGQMPERELERVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQL
HQLRGRVGRSHHRAYAYLVVPDRKAMTADAEKRLEALASLEELGAGFTLATHDLEIRGAG
ELLGDEQSGQIQEIGFGLYTELLERAVRALKSGKVPDFDLTSEHETEVELHLPALIPDDY
LPDVHTRLTLYKRIASARNEDSLRDLQVEMIDRFGLLPDPTKQLFAIAGLKLMATPLGIR
KLDFGPNGGRIVFRDKPEVDPMTIIKLVQRLPRVYKLEGQDKLRVTLELLGASERIRSAQ
DVLIALGARRPG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtattctttcgcacccgcccctccccaccacgcccaagcaacgccgttactgg
accccgccgcacgggtcggcacgggcattactggtggcggaggctgcgcgctcgcatggc
ggcctgctggtagcggtcacgcgcgacactcaacgcgcccatgccctggaagatgaacta
cggatcttcgccggtggcctgccggtgctgcatttccccgactgggaaaccctgccgtac
gacgtcttcagtccgcacccggaaatcgtttcgcagcgcatcgccacgctctatcagctg
ccctcggtcgagcgcggcgtgctggtggtaccgatggccacgctgatgcaacgcatcgcg
ccgcgcagccatatcaccggctcgggcctgatgctgaaaaagggccagaaattcgatctg
agcgccgaacagcgccgcctggaagcggcaggctatcgcaatgtgccgcaagtggccgaa
ccgggcgatttcgccatacgcggtgcgctgatcgatatctttccgatgggcacggccgag
ccgtatcgcgtcgaactgttcgatgacgaggtcgaatcgattcgcagcttcgatccggaa
agtcagcgctcccatcagcaagtggaacgcgtcgagctgttgccggcgcgcgagtttccg
cttaccgacacggcggccaaggattttcgcggcaagctgcgcgagcgcttccctatcgac
gtgcgtcgctgcccgctttaccaggacatgaaagaaggcgtgacaccgggcggcatcgag
tactacctgccgttgttcttcgagcagaccgcgacgctgttcgattacctctccgaaacg
gccgtgttcctgctcgccgagggcgcgctcgacgccgcccaacagttctggcaacagacg
ggcgaacgctacgaccagcgcgcacatgacatcgaacgcccggtgctgccgccggcggag
ctgtacctgtcaccggaacaattgcgcgagcagctcaacaagcgcctgcgcgtggaagtc
gtacccagcgggcacgagcacgccgtcgacaccggcacgcagccggcgccggaactgccg
atcaaccgcaagggcgaagagcccggcacgtcgttacgccacttcatggcgagctatccc
ggccgcctgctgattgccgccgattcggccggccgccgcgaagcgctgatcgaaacgctg
gccgccgccgggatgaaacccgacagcgtcgagaactggcatagcttcgcccctgcaacc
ggtgcagcgcccaagttcgccatcaccacggccgcgctggaacagggttttgcgatcacc
cggccggcgcttaccgtactgaccgagcgcgaactctacggtgagcgcgtgcgcaccgaa
cgcaagcgtcgccgtggtgcggagcgtgatccggaaagcatcatccgcgatctcaccgag
ctgacgatcggcgcgccgatcgtgcatgtcgatcacggtgtcgggcgttatcagggcctg
atctcgatggatgtcggcggcatggccggcgaatttctcaccatcgaatacgccaagggc
gacaagctgtatgtgcccgtggcgcaattgggcctggtcagccgctactccggtaccgcg
cccgaactggcgccgctgcattcgctgggtggcgatgcgtgggaacgcgcgcgcaagaaa
gccgccgaaaaagtgcgcgatgtcgcggccgaactgctggcgatctatgcacagcgcgaa
gcacgcggcggccagtcgctttcgatcgatcgccagttgatcgaagagttcggcgccagc
ttccccttcgaggaaacaccggaccaggaacatgccatcggcgccgtcctcagcgatctt
gtcgcaccgcgcgccatggatcgcgtgatctgtggcgatgtcggcttcggcaagacggag
gtcgcactgcgcgccgcgttcgctgcggccaccgccggcaagcaggtcgcggtcctggta
ccgaccacattgctggcgcagcagcattaccgcaacttcgccgaccgtttcgccgattgg
ccggttcgcgtcgatgtgctttcgcgtttcaaatccaccaaggaagtcaacgaggcgctc
aagcgcctcgccgaggggcagatcgacgtcatcatcggcacgcacaagcttctgcagccg
gacatcaagttcaaggatctcggcctggtcatcgtcgacgaagaacagcgtttcggcgta
cgccagaaagagcagctgaaaaagctgcgcgcggaagtcgacctgctgaccatgaccgcg
acgccaatcccgcgcacgctgaacatggcgatgagcggtctacgcgacctgtcgctgatc
gccacgccgcccgcgcatcgcatggcggtgcgcacgtttatttcggcatgggagcccgcg
ctgatccgagaggcgttccagcgcgagctgcaacgcggcggccaggtgtacttcctgcat
aacgaggtcaacaccatcgaacgtaccgcgcgcgagatcgaggagctgatccccgaggcg
cgtatcggtatcgcccacggccagatgcccgagcgcgagctggaacgggtgatggcggac
ttccatcgccagcgcttcaacgtgctggtgtgcacgacgattatcgaaaccggtatcgat
atcccgacggccaacaccatcatcatcgaccgcgcggaccgcttcggactggcccagctg
catcagctgcgtgggcgcgtcggccgctcgcatcaccgcgcttatgcctatctggtcgtg
cccgatcgcaaggccatgaccgccgatgccgagaagcgcctggaagctttggcctcgctg
gaggaattaggcgcaggctttactctggccacgcacgacctggaaattcgcggtgctggc
gaactgcttggcgacgaacaatccggccagatccaggagatcggcttcggtctctacacc
gagctgttggagcgagccgtgcgcgcgctcaaatcaggcaaggtgccggacttcgatctc
accagcgagcacgagaccgaggtcgagctgcatctgcctgcgctgatacccgacgattac
ctgccggacgtgcatacgcgcctgacgctgtacaagcgcatcgccagtgcgcgcaatgaa
gattcgctgcgcgacctgcaggtggaaatgatcgaccgcttcggcttgctgcccgacccg
accaagcaactgtttgccatcgccgggttgaagctgatggccacgccgctgggtattcgc
aagctcgacttcggtcccaatggcggtcgcatcgttttccgcgacaagccagaagtcgat
ccgatgaccatcatcaagctggttcagcgcctgccgcgcgtctacaaactggaggggcag
gacaagctgcgcgtgacgttggagctgcttggtgcgtcggagcgtattcgcagtgcccag
gatgtgctgatcgcgctgggtgctcggcggcccggctaa
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