Dyella sp. GSA-30: DYGSA30_41520
Help
Entry
DYGSA30_41520 CDS
T10269
Symbol
dnaE1
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03030
DNA replication
dyg03430
Mismatch repair
dyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DYGSA30_41520 (dnaE1)
03430 Mismatch repair
DYGSA30_41520 (dnaE1)
03440 Homologous recombination
DYGSA30_41520 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dyg03032
]
DYGSA30_41520 (dnaE1)
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_41520 (dnaE1)
Enzymes [BR:
dyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DYGSA30_41520 (dnaE1)
DNA replication proteins [BR:
dyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DYGSA30_41520 (dnaE1)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DYGSA30_41520 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
BDU22695
LinkDB
All DBs
Position
4857025..4860570
Genome browser
AA seq
1181 aa
AA seq
DB search
MSVSFAHLHLHSEYSLVDSTIRIKGLVAACVREGIPAVALTDDSNMFALVKFYKACSAAG
IKPIGGSDLWISAPDDPRPWRLTVLCQNRDGYLNLSRLISRAWRDGQHNGKALVDALWLT
PDTSHGLIAVLGRESEVGRIALNQGVDAAVAKLRPMTRLFPDRLYLELTRCGREGEENWN
AAALAIAAELNLPVIASNDVRFLKRDDFEAHEARVCIHQGRVLADPKRPRDYSQEQYLKT
PGDMATLFADIPEALENTLELAKRCNLELSFGTYYLPDFPVPAGHDLSSYIREISREGLK
ERLAHAPLADGCTLADYEARLERELDVIIKMGFPGYFLIVSDFINWGKQHGIPVGPGRGS
GAGSLVAWVLKITDLDPLQFALLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVSRKYGR
DHVSQIITYGSMAAKAVLRDSGRVLGMGYNAVDKIAKLIPARPLDLTLSCALGRSEKAQK
EPDRVVKEFCELYEQDEEARTLIDLALKLESLTRNAGKHAGGVVIAPTPLTDFAPLYCEP
GGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINLRRAKTGEALLDIATLPLD
DAYTYDQVFKKAQTVAVFQFESAGMQRMLKDAKADRFEDLIALGALYRPGPMDLIPSFVA
RKHGREEVQYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKVE
EMAKERAKFREGAAKDGLTGDKADAIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKAHY
PAEFMAATISSDMDNTDKAVTFLDESRAIGLTIQPPDVNASQFMFVAVEPKVIQYGLGAI
KGVGEGACEAIAEERRRGGVYKDLADFCRRVDGSKLNRRVLEALIYSGALDALAPNRASL
MAQLPNAMKAAEQHLRDKQSGQNDMFGAMMESVAPVVQIDLPTVPEWPLEQKLQGERDTL
GHYLSGHPTDPWRDELAQLSTCPLGEIPDRYQPPKPRKNDNDDGNRFRRGPDTPWTVAGM
VTGLRKRGDSDAFVRLEDGTGIIEVSFFGELYQQVAPLLTRDEMLVVEGGLRIDDFSGGG
FQLRARSAYSLSDACRRYARLLQLKLNGIQPSFVEDLRHVLAGFRNGRTTVLLRGYHNQN
AQADLELGEEWRVDAIPALLRAVRGMPGVEAARLRIVKSQE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcagtttcgctcacctccatttgcacagcgagtactcgctggtcgactcgact
atccgcatcaagggattggtcgctgcctgcgtgcgcgagggtattccggctgtcgcgctg
accgacgacagcaacatgttcgccctggtgaagttctacaaggcatgcagcgccgccggc
atcaagccgatcggcggcagcgacctgtggatcagcgcaccagacgacccgcgcccctgg
cgcctgaccgtgttgtgccagaaccgcgacggctacctgaacctgtcgcggctgatctcg
cgcgcctggcgcgacggccagcacaacggcaaggcgctggtcgacgccctctggctcaca
cccgatacctcgcatggcttgatcgccgtgctcgggcgcgaaagcgaagtcggtcgtatc
gccttgaatcagggcgtcgacgcggcggtggccaagctgcgtcccatgacgcgcctgttc
ccggaccgcctgtatctggaattgacgcgttgcggccgcgaaggcgaggaaaactggaac
gccgccgcgctcgccatcgccgccgagctgaacctgccggtgatcgccagcaacgacgtg
cgttttctcaaacgcgacgatttcgaggcgcacgaggcacgcgtttgcattcatcagggt
cgcgtgctcgcggacccgaagcgcccgcgcgactacagccaggagcagtacctcaagacg
ccgggcgatatggcgacgctgttcgccgatattcccgaggcactggaaaacacgctcgaa
ctagccaagcgttgcaacctggaactgagcttcggcacgtattacctgcccgatttcccg
gtaccggcgggccatgacctgtccagctacatccgcgagatttcccgcgaagggctgaag
gaacgtctggcccatgcgccgctcgccgacggctgcaccctggccgactacgaagcgcgc
ctggaacgcgagctggacgtcatcatcaagatgggcttccccggctacttcctgatcgtg
tcggacttcatcaactggggtaagcagcacggcattccggtaggtccgggacgcggttcg
ggtgccggttcgctggtcgcctgggtgttgaagatcaccgacctcgatcctttgcagttc
gccttgctgttcgagcgattcctgaatcccgaacgcgtatcgatgcccgacttcgatatc
gacttctgcatggatcgccgcgacgaggtgatcgactacgtgtcgcgcaaatacggccgc
gaccacgtcagccagatcatcacctacggctcgatggcggccaaggcggtgctgcgcgat
tccggccgcgtgctcggcatgggctacaacgcggtcgacaagatcgccaagctgattccc
gcgcgcccgctcgacctgaccctgtcgtgcgcactcggacgcagcgagaaggcgcagaaa
gaacccgatcgcgtcgtcaaggaattctgcgagctgtacgagcaggacgaagaagcacgc
acgctgatcgacctggcactgaagctcgaaagcctcacccgtaacgccggcaagcacgcc
ggtggcgtggtgatcgcaccgacaccgttgaccgattttgccccgctgtactgcgaaccg
ggcggcggtggcgtggtgacccagtacgacaaggacgacgtcgaggcggttggcctggtg
aagttcgacttcctgggcctgcgtacgctgaccatcatcgattgggcggtgaaggcgatc
aatctgcgtcgcgcgaaaaccggcgaagcgctgctcgacattgcgacgctgccgctcgat
gacgcgtacacctacgatcaggtattcaagaaagcgcagacggtagcggtcttccagttc
gaatcggccggcatgcagcgcatgctcaaggacgccaaggcggaccgcttcgaggacctc
attgcgctcggcgcgctgtatcgccccggcccgatggacctgattccaagcttcgtggcg
cgtaagcacggacgcgaggaagtccaataccccgacccgcgcgtcgagcctgtcctgaaa
gagacctacggcatcatggtctatcaggagcaggtgatgcagatggcgcagatcgtgggc
ggttactcgctcggcggcgccgacctgctgcgccgcgcgatgggtaagaagaaagtcgag
gaaatggcgaaggagcgcgccaagttccgcgagggcgcggccaaggacgggctcaccggc
gacaaggccgatgccatcttcgacttgatggaaaaattcgccggctacggcttcaacaag
tcgcacgccgccgcctacgccctggtctcctaccagaccgcctggctgaaagcgcactac
cccgccgagttcatggccgcgacgatttcgtcggacatggacaacaccgacaaggcggtc
accttcctcgacgaatcgcgggcgatcggcctgaccatccagccgccggacgtgaacgct
tcgcagttcatgttcgtcgcggtcgagcccaaggtcattcagtatggcctgggcgcgatc
aagggcgtcggcgaaggcgcctgcgaggccatcgccgaagaacgccgtcgcggtggtgtc
tacaaggatctggccgacttctgccgccgtgtcgatggcagcaagctcaatcgccgcgtg
ctcgaagcgctgatctactccggcgcgctggatgcgctggcgcccaaccgcgccagcctg
atggcgcagctgcccaatgcgatgaaggcggccgagcagcacctgcgcgacaagcagtcg
ggtcagaacgatatgttcggggcgatgatggagtcggtggcgccggtcgtgcagatcgac
ctgcccaccgtgcccgagtggccgctggagcagaagctgcagggcgagcgcgacaccctg
ggccactacctgtccggccaccccaccgacccctggcgggacgagctggcgcagctgtcg
acctgcccgctgggcgagattcccgaccgctaccagccgcccaagccacgcaagaacgac
aacgacgacggcaaccgcttccgccgcggcccggatacgccctggaccgtggcaggcatg
gtcacgggcctgcgcaaacgcggcgacagcgatgccttcgtgcggctggaagacggcacc
ggcattatcgaagtgagctttttcggcgagctatatcaacaggtcgcccccctgctcacc
cgcgatgagatgctggtggtcgaaggcggcctgcgcatcgacgatttctccggcggcggc
ttccagttgcgggcccgcagcgcctactccctgagcgacgcctgccgccgctacgcccgc
ctgctgcagctcaagctcaacggcatccagcccagcttcgtcgaggacctgcgccacgtc
ctggccggtttccgcaacggccgcaccaccgtgctcctgcgtggctaccacaaccagaac
gctcaggccgacctggaactgggcgaggaatggcgcgtggacgcgattccggcgctgctg
cgggcggtgcgggggatgccgggggtcgaggcggcccggctgcgcatcgttaagagccag
gagtga
DBGET
integrated database retrieval system
