Dyella sp. GSA-30: DYGSA30_44420
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Entry
DYGSA30_44420 CDS
T10269
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dyg Dyella sp. GSA-30
Pathway
dyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DYGSA30_44420 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyg03019
]
DYGSA30_44420 (recQ)
03400 DNA repair and recombination proteins [BR:
dyg03400
]
DYGSA30_44420 (recQ)
Enzymes [BR:
dyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYGSA30_44420 (recQ)
Messenger RNA biogenesis [BR:
dyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DYGSA30_44420 (recQ)
DNA repair and recombination proteins [BR:
dyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DYGSA30_44420 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Helicase_Sgs1
HHH
SelB-wing_2
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
BDU22985
LinkDB
All DBs
Position
complement(5161262..5163088)
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AA seq
608 aa
AA seq
DB search
MDTMHASPLDILQSVFGYAHFRDQQQAIVDQVAEGGDALVLMPTGGGKSLCYQIPAMLRQ
GTGIVVSPLIALMQDQVDALREAGVAAAYLNSSLSAEDQREVERRLLTGELNLLYVAPER
LLTQRFLSQLERTEVALFAIDEAHCVSQWGHDFRPEYRELAVLHQRFPEVPRIALTATAD
PRTREEIVERLALQNARQFISSFDRPNIRYKVALRDNAKRQLLDFLEGHRGEAGIVYALS
RRKVDETAEWLASEGIAALPYHAGLDAPTRAAHQQRFLREDGVVMVATVAFGMGIDKPDV
RFVAHLDLPRSMEGYYQETGRGGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRVE
RQKLESLLAYAEATHCRRELLLGAFGETYQGPCGNCDNCREPPKTWDATVPAQKALSCVY
RSGQRYGSGHVIDILRGVDNARMSQLGHDRLSTFGIGADMDAKQWGSVLRQLLAAGLLEA
DAEGYGTLRLTKTSRDVLVGNQRVLLREDMRPERRSRRRADSKLVTGGSLGIEAYEQPMW
DALRALRAQLAKQHGVPAYVIFHDATLLGMLRALPSNEEELASVSGVGEAKLKRYGKDFL
AVINAEAE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggacacgatgcacgcctcacctctggacattcttcaaagcgttttcggttacgcgcat
tttcgcgatcagcaacaggctatcgtcgatcaggtagccgaaggcggcgacgccctggtg
ctgatgccgaccggcggcggcaagtcgctgtgctatcagatccctgccatgttgcgtcaa
ggcaccggcatcgtcgtgtcgcccttgatcgccttgatgcaggatcaggtcgacgctttg
cgcgaagcgggtgtcgcggcggcctacctcaattccagcctgagcgcggaggaccagcgc
gaggtcgagcgccgtctgctgacgggcgaactgaacctgctgtatgtcgcgcccgagcgc
ctgctgacccagcgtttcctgagccagcttgaacgtacggaagtcgcattgtttgcgatc
gacgaagcgcattgcgtatcgcaatggggacacgactttcgtccggagtatcgcgagctg
gcggtgctgcatcagcggtttcccgaggtgccgcgcattgcgctcaccgccactgccgat
ccacgcacgcgcgaagagatcgtcgaacgccttgcgctgcagaatgcgcgtcaatttatt
tcgagcttcgatcgacccaatatccgctacaaggtcgcgctgcgcgataacgccaagcga
caactgctggattttctcgaaggtcatcgcggggaagccggcatcgtctacgcgctcagc
cggcgcaaagtggatgaaaccgctgagtggttagcctccgagggcatcgccgcgttgccc
tatcacgccggtctcgatgcgccgacacgtgcggcgcatcagcagcgctttttgcgcgaa
gacggcgtggtgatggtggcgacggtggcgttcggcatgggcattgacaagcccgacgta
cgcttcgtcgcgcatctcgatctgccgcgcagcatggaaggttattaccaggagaccgga
cgtggcgggcgcgatggcctgccggccgaagcgtggatgatctacggtctgtccgatgtc
gtgacgatgagtcagatgatcgcgcagtccgagtcggccgacgaacgcaagcgcgtcgag
cgtcagaagctcgaatcgctgttggcctatgcggaagccacgcactgccgccgcgaactg
ttgctgggcgcgttcggcgaaacctatcaaggcccatgcggcaattgcgataactgccgt
gaaccgcccaagacctgggacgccacggtgcctgcgcaaaaagccctgtcgtgcgtttat
cgtagcggacagcgttatggctccggccatgtcatcgacattctgcgcggcgtggacaat
gcacggatgtcccagctgggtcacgatcgcctgagcacgtttgggattggtgccgacatg
gatgccaagcaatggggttcggtgttgcgtcagctgctggccgcgggcctgctggaggcc
gacgcggaaggctatggcaccctgcgtctgaccaagaccagccgagacgtactggtcggc
aaccagcgtgtgctgctgcgagaggatatgcggcccgagcgccgttcgcgccgtcgcgcc
gacagcaagttggtgaccggtggcagccttgggatcgaagcctacgagcagccgatgtgg
gatgcgttgcgtgccctgcgtgcacagttggccaagcagcacggcgtgccggcttatgtg
atcttccacgacgcgaccttgctcggcatgctgcgtgcgctgccttcgaacgaagaggag
ctggcatcggtcagcggcgtgggcgaggcgaaattgaaacgctacggcaaggattttctc
gccgtgatcaacgccgaggccgaatag
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