Dysgonomonas sp. HDW5B: G7051_05200
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Entry
G7051_05200 CDS
T09584
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dyh
Dysgonomonas sp. HDW5B
Pathway
dyh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dyh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G7051_05200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dyh03021
]
G7051_05200 (rpoC)
03400 DNA repair and recombination proteins [BR:
dyh03400
]
G7051_05200 (rpoC)
Enzymes [BR:
dyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G7051_05200 (rpoC)
Transcription machinery [BR:
dyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G7051_05200 (rpoC)
DNA repair and recombination proteins [BR:
dyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G7051_05200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QIK53770
LinkDB
All DBs
Position
1262963..1267246
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKDSKVKSSFSKITVSLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERTGHIHLVVPVAHIWYFRSLPNKM
GYLLGIPTKKLDMIIYYERYVVIQAGIKEEEGVAYKDLLTEEEYLNHLDTLPKDNQLLDD
MDPNKFIAKMGAEAVYDLLARLNLDSLANTLRHRANTDTSQQRKNEALKQLQVVEAFRGS
KAKNRPEWMVVKIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAP
DVILRNEKRMLQEAVDSLFDNSRKSSAIKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKEPVV
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLSCTAFNADFDGDQMAV
HLPLGNDAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKIRPGAQGEGLTFY
GPEEAIIAYNEKKVDIHALIKVYVRDLDENGQVATIMRETTVGRVLVNQNTPIEVGFINE
ILSKKSLRDIIGNIIKLAGVAKTAQFLDDIKDLGYTMAFRGGLSFNLEDVIIPAEKETLV
KQGYDEVEQILGNYNMGFITYNERYNQIIDTWTHINSKLSNILMKQLSEDDQGFNAVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGAQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLVCTELKNNEEVVASLYERI
LGRVSVHDIQHPLTGEVLVESGEQIREEAAIIIQNSPIERVEIRSVLTCESKKGVCAKCY
GRNLATGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGIASNIATENSIMTKYDGILE
IDDLRVVETIDEAGKKVQIVVSRLVEIRVVDPNTKIVLLTHNIPYGAKLYFKEGANVKKG
DVICEWDPFNAVIVSEATGKIKFENVIENVTYKVESDEQTGLKEKIIIESRDKTKAPEAH
ILDEKGNIIKTYSLPLGAHVVKEDGDTMKAGDVLVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEASFGKIKRGNREVIITSKTGEIKKYLVPLSKQILVQENDFIRAGM
PLSDGATTPSDILAIMGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEVVD
PGDTRFLEQQVIDKHEVMEENDRIWGKKVVVDAGDSSTFEPGQIVTARKLRDENSMLKRR
DLRIVEVRDAIPATANQILQGITRAALQTQSFMSAASFQETTKVLNDAAIHGKVDRLEGL
KENVICGHLIPAGTGQRDFDKLVVGTKEDFDRVMANRKTVVDFDSVE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagatagtaaagtaaagagtagcttttcaaaaatcacagtaagtctt
gcttctccggaagaaattctggaaaattcaagcggtgaagtcttgaaacccgaaactata
aactatcgtacctacaaacccgaacgtgatggtttgttctgcgaacgtatttttggtccg
gtaaaagactacgaatgtcattgcggtaaatacaaacgtatccgatataaaggtatcgtc
tgcgaccgttgtggtgtagaggttactgagaaaaaagtaagacgcgagcgtaccggtcac
atccacttggtagtgcctgttgctcacatctggtatttccgttctttacctaacaaaatg
ggttatcttcttggtataccaaccaagaaacttgatatgatcatttattacgaacgttat
gttgtaatacaagctggtatcaaagaagaagaaggtgttgcttataaagatttattgact
gaagaagaatatctaaaccacttagatacacttcctaaagacaatcaactgttggacgac
atggatccaaacaagtttattgccaaaatgggagctgaagcggtttatgatctattggct
cgtttgaatctcgattcattggctaatacactccgtcacagagctaatacagatacttct
caacaacgtaaaaacgaggctttgaaacaacttcaggttgtggaagctttccgtggatcg
aaagcaaaaaatcgcccggaatggatggttgttaagattgtacctgtaataccacccgaa
cttcgtccactggttcctttggatggaggtcgttttgctacatctgacttgaatgacttg
tatcgtcgtgttatcatacgtaacaaccgtttgaaacgattgatcgacattaaagctccg
gatgtaatccttcgtaatgagaaacgtatgcttcaagaggctgtggattcattgtttgat
aactctcgtaaatcgagtgcaatcaaaacagaatcgaaccgccctcttaaatcactttcc
gatagtttgaagggtaaacaaggacgtttccgtcaaaaccttttgggtaaacgtgttgac
tactcggctcgttcggtaattgtcgttggacctgaattgaagatgcacgagtgtggtctt
ccaaaagatatggctgctgagctattcaaaccatttgtgatccgtaaattgattgagcgt
ggtatcgtgaaaacggtaaaatctgctaaaaagattgttgatcgcaaagaacctgtagta
tgggatattcttgagcatgtgatgaaaggtcaccccgtattgctcaaccgtgcccctact
cttcaccgtttgggtattcaagcattccaacctaaaatgatcgagggtaaagcaatccaa
ttgcacccactttcatgtactgccttcaatgccgactttgacggtgaccagatggctgtt
cacttacctttgggtaacgacgctgtattggaagctcaaatgttgatgcttgcttctcac
aatatcttgaaccctgctaacggtgcgcctattactgtaccttctcaggacatggtattg
ggattgtattatatcacaaaaatacgtccgggagcacaaggtgaaggtcttactttttac
ggacctgaagaagctatcattgcttataatgagaagaaagttgatatacatgcccttatt
aaagtgtatgtaagagaccttgacgagaacggacaagtggctacaattatgcgtgaaacc
acggttggacgtgtacttgtaaaccaaaatactccgatcgaagtaggatttatcaacgaa
atcttatctaaaaaatcactaagagatattatcggtaatatcatcaaattggcaggagtt
gctaaaacagctcagttccttgacgatattaaagatcttggatatacaatggcattccgt
ggaggattgtcgtttaaccttgaggatgtaattatccccgcagaaaaagaaacgctggtt
aaacaaggatatgatgaagttgaacagattctaggaaactacaatatgggattcatcacc
tataacgagcgttacaaccagattattgatacctggacacacatcaactctaagttgtcg
aacattttgatgaaacaactttcggaagatgaccaaggttttaatgctgtatacatgatg
cttgattcgggagcccgtggttctaaagagcagattcgtcagttgtcaggtatgcgtgga
ttgatggcaaaacctcagaaaagtggagctgaaggtgctcaaattattgagaatcctatc
ctttctaactttaaagaaggtctgtcggtgttagagtactttatctctacccacggtgct
cgtaaaggtcttgccgatacagcattgaaaacagccgatgcaggatacttaacacgtcgt
ctggttgacgtatcacaagatgtgatcatcaatgaagaagactgtggtacacttcgcgga
cttgtttgtacagaacttaaaaacaacgaagaagttgtagcttcactatacgaacgtata
ttgggtcgtgtttcggttcatgatattcaacatcctttgacaggagaagtccttgttgag
tctggagaacaaatcagagaagaagccgctataattattcaaaattcaccaattgagcgt
gttgaaatccgttcggtattgacttgcgaatctaaaaaaggcgtatgtgctaagtgttac
ggacgtaaccttgccacaggtcgtatggttcaaaaaggagaagccgttggagttatcgct
gctcagtctatcggtgagccgggtacacagcttacacttcgtacgttccacgtagggggt
atcgcttcgaatattgctactgaaaacagcatcatgacaaaatacgatggtattttggaa
attgatgacttgcgtgttgttgaaactatcgacgaagcaggtaagaaagtacaaatcgtt
gtgagccgtctggttgaaatacgtgtggttgatcctaatactaaaatcgtattacttact
cacaatattccttatggtgctaaactttatttcaaagaaggtgccaacgttaagaaaggt
gatgtaatttgcgaatgggatccatttaatgctgttatcgtatcggaagcaacaggtaag
atcaagttcgaaaacgtaatagaaaatgttacttacaaagtagagtcggatgaacaaacc
ggtttgaaagaaaagatcattatcgaatcgcgtgataagactaaagctcctgaggcacac
attctggatgagaaaggcaatataatcaaaacatacagtttacctcttggtgctcacgtt
gtcaaagaagatggcgacactatgaaagccggagatgtactggttaagatacctcgtgct
gtaggtaaagcgggtgatattaccgggggtcttcctcgtgttaccgagctattcgaagca
cgtaatccttctaaccctgctgttgtatctgaaattgatggagaggcttcgtttggtaag
atcaaacgtggtaacagagaggtaattattacatctaaaacaggtgaaataaagaaatat
ctggttccactttctaaacaaattctggtacaagagaatgactttatccgtgcaggtatg
cctttatcggatggtgctactactccttcggatattcttgctatcatgggaccaactgcg
gtacaagagtatattgtaaacgaagtacaggatgtataccgtctgcaaggtgtgaaaatc
aatgacaaacacttcgaggttatcgtacgtcagatgatgcgtaaggtagaagtggttgat
ccgggagacactcgtttccttgaacaacaagtgattgataagcatgaggtaatggaagaa
aacgatcgtatctggggtaaaaaagtggttgtagatgcaggtgactcttctacattcgaa
cctggacagattgttacagctcgtaaactgagagacgaaaactcgatgttgaaacgacgt
gaccttcgtatagtagaagttcgtgatgcaattcctgcaacagcgaaccaaatacttcaa
ggtatcacccgtgcggctcttcaaacacaaagcttcatgtcggctgcttcgttccaggaa
actactaaggttcttaacgatgctgctatccatggtaaggttgacagattggaaggtctg
aaagaaaacgttatttgcggtcacttgattcctgcaggtacaggtcaacgagattttgat
aagcttgttgttggtactaaagaagattttgacagagtaatggctaacagaaagactgtt
gttgattttgacagtgtagagtaa
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