Dysgonomonas sp. HDW5B: G7051_11850
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Entry
G7051_11850 CDS
T09584
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dyh
Dysgonomonas sp. HDW5B
Pathway
dyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7051_11850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dyh03019
]
G7051_11850
Enzymes [BR:
dyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G7051_11850
Messenger RNA biogenesis [BR:
dyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G7051_11850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
ERCC3_RAD25_C
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QIK54992
LinkDB
All DBs
Position
complement(2889997..2891271)
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AA seq
424 aa
AA seq
DB search
MTFEQLNLIEPILKALKDQNYTTPTPIQAEAIPTLLEGNDLLGVAQTGTGKTAAFSIPII
QLLHKENSHGGRKGIKALVLTPTRELAIQIEENVKEYSKYTSLRHTVIYGGVPQKKQTDA
LRAGIDILIATPGRLLDLISQKYINLKTLEFFVLDEADQMLDMGFIHDIKKILPLLPKQR
QSLFFSATMPVEIAKLANTILHNPTRVEVTPASSTVDKIEQSIYHVDKKDKVDLLIDLLK
NKELESVLVFARTKHGSDKVAKALNKAGVKTEAIHGNKSQNARQNALKSFKDKTTRVLIA
TDIAARGIDVDHLSHVFNFDLPNVPETYVHRIGRTGRAGRSGVAIAFCDREELPLLKDIH
KLIKKNIPVVEEHDYLPSKSRAIPIAKPELAKDNHRSQSKGHQDRPNKTQRPQGHTKVIV
KKQN
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaacaattaaacctcatagagcctatattgaaagctcttaaagaccaaaac
tatacaactccaactcctatacaagctgaagcaataccaaccctattggagggaaatgac
ttactaggtgtagctcagacgggaacaggaaaaacggcagcattctctatccctattatt
caactgctacataaagaaaattcacatggcggaagaaaaggtataaaagccttagtatta
acaccaacccgtgaacttgctatacagattgaagaaaatgtaaaggaatacagtaaatat
acttctttgcgacatactgtaatttacggaggagtacctcaaaagaaacaaactgatgct
ttacgagcaggaattgatattcttatcgcaactcccggaaggctgttagacctgattagc
caaaagtatatcaatcttaagactcttgagttttttgtattggatgaggcagatcagatg
ctcgatatgggttttattcatgatatcaaaaagatattgcccttattacctaaacaaagg
caatcgcttttcttttcggctaccatgcctgtagagattgctaaactggcaaataccatt
ctgcataatccgacaagggttgaggttactccggcatcttcaactgtagacaagattgaa
cagtcgatctatcatgtcgataaaaaagataaagtagatctccttatagaccttctaaag
aataaagaacttgaatctgttttagtatttgcacgtactaaacacggttctgataaagta
gccaaggctcttaacaaagccggtgtaaaaaccgaagctatacatggaaataaatctcag
aatgcacgtcaaaacgcattgaagagtttcaaagataaaacaactcgtgtacttatagct
accgatattgcagcacgtggaatagatgtcgatcatctttcgcacgtatttaatttcgat
ttacctaacgttcccgagacttatgttcaccgtatcgggcgtacaggtcgtgccggtcgt
agcggtgttgccattgcgttttgtgatcgtgaagaattgcctttattaaaggacatccac
aaactcatcaagaagaatattcctgtcgttgaagagcacgattatttgccttctaaatca
agagctattcctattgcaaaacctgaactggcgaaagataatcatagaagccaaagcaaa
ggtcatcaagatcgtccgaataaaactcaaagacctcagggacatactaaggttatagta
aaaaaacagaactaa
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